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Polymorphic Identification of Simple Sequence Repeat (SSR) Marker for Developing Aluminum-Tolerance Upland Rice

Jurnal Biodjati · Vol. 5 No. 1 (2020) · hlm. 50–62

DOI
10.15575/biodjati.v5i1.7990
ISSN
2541-4208, 2548-1606
Terbit
2020-05-30
Penerbit
UIN Sunan Gunung Djati Bandung
Bahasa
eng

Abstrak

SSR marker is one of the genetic markers widely applied in plant breeding programs. The application of molecular markers in plant breeding is meant to accelerate the selection of cross-progeny. The research aimed to identify the SSR primers polymorphism between the parent and control that linked to Al tolerance and verify the cross-progeny of five crosses. The result gained from 37 SSR primers used in this study showed that only nine primers are polymorphic. These nine polymorphic primers are RM257, RM214, RM247, RM205, RM490, RM262, RM569, RM271, and RM19. The application of polymorphic markers on five cross-progeny which have shown the same band pattern as the parents and tolerant control on the use of 9 SSR primers recorded as follows: RM257 2 lines, RM214 5 lines, RM247 5 lines, RM205 lines, RM490 13 lines, RM262 5 lines, RM569 7 lines, RM271 4 lines, and RM19 6 lines. The selected SSR primers linked to Al tolerance in this research can be used as a reference for molecular breeding strategies to develop new Al tolerance rice varieties in dryland conditions.

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  • Indonesian Institute of Sciences
  • Universitas Gadjah Mada
  • IPB University
  • Nasional University
  • Hasanuddin University
  • University of Mataram
  • Ministry of Marine Affairs and Fisheries
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Rekan penulisOrganisasiArtikel bersama
Wahyuni WahyuniHasanuddin University5
Sri IndrayaniIPB University5
Yani CahyaniIndonesian Institute of Sciences3
Heru WibowoIndonesian Institute of Sciences2
Agus ArfaniIndonesian Institute of Sciences2
Iwan SaskiawanIndonesian Institute of Sciences2
Kikin Hamzah MutaqinIPB University2
Sri Hendrasturi HidayatAfiliasi tidak diketahui2
Muhamad SyukurIPB University2
Rusli FidriyantoNational Research and Innovation Agency2
Luluk PrihastutiNasional University1
Aziz SaputraNasional University1
Yasper Michael MambrasarIndonesian Institute of Sciences1
Indira RiastiwiIndonesian Institute of Sciences1
Urip PerwitasariIndonesian Institute of Sciences1
Tri Ratna SulistiyaniIndonesian Institute of Sciences1
Slamet Diah VolkandariIndonesian Institute of Sciences1
Marlin Megalestin RaunsaiIndonesian Institute of Sciences1
Nurul Fitri SariIndonesian Institute of Sciences1
Leberina Kristina IboIndonesian Institute of Sciences1
Susamto SomowiyarjoUniversitas Gadjah Mada1
Dini Wahyu Kartika SariUniversitas Gadjah Mada1
Sedyo HartonoUniversitas Gadjah Mada1
Sri SulandariUniversitas Gadjah Mada1
Mery WindarningsihUniversity of Mataram1
Christina Retna HandayaniMinistry of Marine Affairs and Fisheries1

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Sumber metadata: OAI-PMH (metadata jurnal) https://journal.uinsgd.ac.id/index.php/biodjati/oai, pertama di-harvest 7 Nov 2026, terakhir terlihat 8 Nov 2026.
Metadata asli (oai_dc) 
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	<dc:title xml:lang="en-US">Polymorphic Identification of Simple Sequence Repeat (SSR) Marker for Developing Aluminum-Tolerance Upland Rice</dc:title>
	<dc:creator>Anggraheni, Yuliana Galih Dyan</dc:creator>
	<dc:creator>Mulyaningsih, Enung Sri</dc:creator>
	<dc:creator>Priadi, Dody</dc:creator>
	<dc:creator>Deswina, Puspita</dc:creator>
	<dc:creator>Sulistyowati, Yuli</dc:creator>
	<dc:creator>Adi, Eko Binnaryo Mei</dc:creator>
	<dc:creator>Perdani, Ambar Yuswi</dc:creator>
	<dc:creator>Nuro, Fiqolbi</dc:creator>
	<dc:creator>Paradisa, Yashanti Berlinda</dc:creator>
	<dc:subject xml:lang="en-US">aluminum tolerance</dc:subject>
	<dc:subject xml:lang="en-US">cross-progeny</dc:subject>
	<dc:subject xml:lang="en-US">plant breeding</dc:subject>
	<dc:subject xml:lang="en-US">SSR primer</dc:subject>
	<dc:subject xml:lang="en-US">upland rice.</dc:subject>
	<dc:description xml:lang="en-US">SSR marker is one of the genetic markers widely applied in plant breeding programs. The application of molecular markers in plant breeding is meant to accelerate the selection of cross-progeny. The research aimed to identify the SSR primers polymorphism between the parent and control that linked to Al tolerance and verify the cross-progeny of five crosses. The result gained from 37 SSR primers used in this study showed that only nine primers are polymorphic. These nine polymorphic primers are RM257, RM214, RM247, RM205, RM490, RM262, RM569, RM271, and RM19. The application of polymorphic markers on five cross-progeny which have shown the same band pattern as the parents and tolerant control on the use of 9 SSR primers recorded as follows: RM257 2 lines, RM214 5 lines, RM247 5 lines, RM205 lines, RM490 13 lines, RM262 5 lines, RM569 7 lines, RM271 4 lines, and RM19 6 lines. The selected SSR primers linked to Al tolerance in this research can be used as a reference for molecular breeding strategies to develop new Al tolerance rice varieties in dryland conditions.</dc:description>
	<dc:publisher xml:lang="en-US">UIN Sunan Gunung Djati Bandung</dc:publisher>
	<dc:date>2020-05-30</dc:date>
	<dc:type>info:eu-repo/semantics/article</dc:type>
	<dc:type>info:eu-repo/semantics/publishedVersion</dc:type>
	<dc:type xml:lang="en-US">Peer-reviewed Article</dc:type>
	<dc:format>application/pdf</dc:format>
	<dc:identifier>https://journal.uinsgd.ac.id/index.php/biodjati/article/view/7990</dc:identifier>
	<dc:identifier>10.15575/biodjati.v5i1.7990</dc:identifier>
	<dc:source xml:lang="en-US">Jurnal Biodjati; Vol. 5 No. 1 (2020): May; 50-62</dc:source>
	<dc:source xml:lang="id-ID">Jurnal Biodjati; Vol 5 No 1 (2020): May; 50-62</dc:source>
	<dc:source>2541-4208</dc:source>
	<dc:source>2548-1606</dc:source>
	<dc:language>eng</dc:language>
	<dc:relation>https://journal.uinsgd.ac.id/index.php/biodjati/article/view/7990/4095</dc:relation>
	<dc:rights xml:lang="en-US">Copyright (c) 2020 Jurnal Biodjati</dc:rights>
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