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Phenotypic Evaluation and Genetic Profiling of Shallot Genotypes Adapted to Peatland of South Kalimantan Using Simple Sequence Repeat (SSR) Markers

AGRIVITA, Journal of Agricultural Science · Vol. 41 No. 1 (2019) · hlm. 74–87

DOI
10.17503/agrivita.v41i1.1466
ISSN
2477-8516, 0126-0537
Terbit
2019-01-29
Penerbit
Faculty of Agriculture University of Brawijaya in collaboration with PERAGI
Bahasa
eng
Lisensi
creativecommons.org/licenses/by-nc/4.0

Abstrak

The escalating demand of shallot has forced the increase of domestic production, including through extension of harvest area by utilization of arable land on peatland. This study was aimed to analyze genetic profile of shallot adapted in peatland areas using SSR markers. Twenty-one shallot genotypes were tested in the field and eighteen primers dispersed throughout the genome was applied to analyze genetic diversity of the peatland-adapted shallots. Phenotypic evaluation revealed that shallot yield potential ranged from 6.66 to 14.21 t/ha. Of these, seven shallot clones (11 NA, 1111 TA, 12 NA, 12 NC, 20 NA and 22 N) had good yield potential and comparable with those of five released shallot varieties. Nine out of 12 shallot clones were moderately resistant to Alternaria porii. Clustering analysis showed that shallot genotypes were clustered into two main groups, Clustered I and II which consisted of 13 and 8 genotypes, respectively. The closest genetic relatedness was observed between 8NC and 8NA (0.85), while the farthest ones was between 11NA and Kramat2 (0.51). This result implies that cross combination between 11NA and Kramat2 is valuable and suitable for breeding programs aimed at improving shallot potential yield in the future.

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34 penulis · 104 tautan kepenulisan bersama · 36 lintas organisasi

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  • IPB University
  • Indonesian Center for Agricultural Biotechnology and Genetic Resource Research and Development
  • National Research and Innovation Agency
  • Padjadjaran University
  • University of Bengkulu
  • Sebelas Maret University
  • Indonesian Institute of Sciences
  • Organisasi lain
  • Afiliasi tidak diketahui
  • Organisasi berbeda
  • Organisasi sama
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Tampilkan sebagai tabel
Rekan penulisOrganisasiArtikel bersama
Media Fitri Isma NugrahaAfiliasi tidak diketahui2
Hessy NovitaNational Research and Innovation Agency2
Rossa YunitaIndonesian Center for Agricultural Biotechnology and Genetic Resource Research and Development2
Wening EnggariniIndonesian Center for Agricultural Biotechnology and Genetic Resource Research and Development2
Yuliasti YuliastiNational Nuclear Energy Agency of Indonesia2
Noladhi WicaksanaPadjadjaran University2
Anas AnasPadjadjaran University2
Muh. Alias L. RajamuddinIPB University1
Fasya Hadaina MaharaniAfiliasi tidak diketahui1
Berna ElyaUniversity of Indonesia1
Atriyon JulzarikaIndonesian National Institute of Aeronautics and Space1
Alias RadjamuddinAfiliasi tidak diketahui1
Siti MarwiyahUniversitas Dr. Soetomo1
Rustikawati RustikawatiUniversity of Bengkulu1
Catur HerisonUniversity of Bengkulu1
Surjono Hadi SutjahjoIPB University1
Alimuddin AlimuddinIPB University1
Andi ParenrengiNational Research and Innovation Agency1
Utut WidyastutiIPB University1
Emma SuryatiNational Research and Innovation Agency1
Hajrial AswidinnoorAfiliasi tidak diketahui1
Dwinita Wikan UtamiAfiliasi tidak diketahui1
SUGIONO MOELJOPAWIROAfiliasi tidak diketahui1
IDA HANARIDAAfiliasi tidak diketahui1
Edi PurwantoSebelas Maret University1
Nina Agusti WidaningsihIPB University1
N. NandariyahSebelas Maret University1

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Sumber metadata: OAI-PMH (metadata jurnal) https://agrivita.ub.ac.id/index.php/agrivita/oai, pertama di-harvest 8 Nov 2026, terakhir terlihat 8 Nov 2026.
Metadata asli (oai_dc) 
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	<dc:title xml:lang="en-US">Phenotypic Evaluation and Genetic Profiling of Shallot Genotypes Adapted to Peatland of South Kalimantan Using Simple Sequence Repeat (SSR) Markers</dc:title>
	<dc:creator>Reflinur, Reflinur</dc:creator>
	<dc:creator>Handayani, Tri</dc:creator>
	<dc:creator>M. Hidayat, Iteu</dc:creator>
	<dc:creator>Sulastrini, Ineu</dc:creator>
	<dc:creator>Salamiah, Salamiah</dc:creator>
	<dc:creator>Pramudyani, Lelya</dc:creator>
	<dc:creator>Waluyo, Nurmalita</dc:creator>
	<dc:subject xml:lang="en-US">molecular breeding</dc:subject>
	<dc:subject xml:lang="en-US">Allium cepa group Aggregatum; peatland; shallot; Simple Sequence Repeat (SSR)</dc:subject>
	<dc:description xml:lang="en-US">The escalating demand of shallot has forced the increase of domestic production, including through extension of harvest area by utilization of arable land on peatland. This study was aimed to analyze genetic profile of shallot adapted in peatland areas using SSR markers. Twenty-one shallot genotypes were tested in the field and eighteen primers dispersed throughout the genome was applied to analyze genetic diversity of the peatland-adapted shallots. Phenotypic evaluation revealed that shallot yield potential ranged from 6.66 to 14.21 t/ha. Of these, seven shallot clones (11 NA, 1111 TA, 12 NA, 12 NC, 20 NA and 22 N) had good yield potential and comparable with those of five released shallot varieties. Nine out of 12 shallot clones were moderately resistant to Alternaria porii. Clustering analysis showed that shallot genotypes were clustered into two main groups, Clustered I and II which consisted of 13 and 8 genotypes, respectively. The closest genetic relatedness was observed between 8NC and 8NA (0.85), while the farthest ones was between 11NA and Kramat2 (0.51). This result implies that cross combination between 11NA and Kramat2 is valuable and suitable for breeding programs aimed at improving shallot potential yield in the future.</dc:description>
	<dc:publisher xml:lang="en-US">Faculty of Agriculture University of Brawijaya in collaboration with PERAGI</dc:publisher>
	<dc:contributor xml:lang="en-US">Indonesian Agency for Agriculture Research and Development (IAARD) for research grant through KKP3N program 2016</dc:contributor>
	<dc:date>2019-01-29</dc:date>
	<dc:type>info:eu-repo/semantics/article</dc:type>
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	<dc:type xml:lang="en-US">Peer-reviewed Article</dc:type>
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	<dc:identifier>https://agrivita.ub.ac.id/index.php/agrivita/article/view/1466</dc:identifier>
	<dc:identifier>10.17503/agrivita.v41i1.1466</dc:identifier>
	<dc:source xml:lang="en-US">AGRIVITA Journal of Agricultural Science; Vol 41, No 1 (2019); 74-87</dc:source>
	<dc:source>2477-8516</dc:source>
	<dc:source>0126-0537</dc:source>
	<dc:source>10.17503/agrivita.v41i1</dc:source>
	<dc:language>eng</dc:language>
	<dc:relation>https://agrivita.ub.ac.id/index.php/agrivita/article/view/1466/1039</dc:relation>
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	<dc:rights xml:lang="en-US">Copyright (c) 2019 Universitas Brawijaya</dc:rights>
	<dc:rights xml:lang="en-US">http://creativecommons.org/licenses/by-nc/4.0</dc:rights>
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