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DNA BARCODE CHARACTERIZATION OF MISTLETOE INFESTATION IN TEAK CLONAL SEED ORCHARD (CSO) IN PADANGAN, EAST JAVA PROVINCE, INDONESIA

BIOTROPIA · Vol. 24 No. 2 (2017) · hlm. 140–152

DOI
10.11598/btb.2017.24.2.651
ISSN
1907-770X, 0215-6334
Terbit
2017-08-31
Penerbit
SEAMEO BIOTROP
Bahasa
en
Lisensi
creativecommons.org/licenses/by-nc-nd/4.0

Abstrak

For effective teak plantation management, early detection system in controlling teak mistletoe requires various basic information, including degree of infestation and accuracy of the species names. Mistletoe infestations in teak and mistletoe species name have been reported, but there are still problems in identifying the correct species or subspecies due to morphological similarity. The objective of this study was to clarify the species identity of hemi-parasitic mistletoe plants, which were found in teak Clonal Seed Orchard (CSO) in Padangan, East Java Province, Indonesia using DNA barcodes. Species identification of teak mistletoe based on leaf morphological characteristics and universal DNA barcode regions (i.e. matK and rbcL) were carried out. The results showed that the Canonical Discriminant Analysis (CDA) could differentiate Dendrophthoe pentandra and Macrosolen tetragonus based on leaf morphological characteristics. Variables having high correlation to distinguish both species were length of petiole, width of the widest leaf, number of secondary leaf veins, leaf base shape, aspect ratio, form factor and perimeter ratio of diameter. The results of DNA barcoding showed that the two DNA barcode regions presented good amplification and sequence results. Both DNA barcode regions successfully differentiated two species i.e. D. pentandra and M. tetragonus which belong to Loranthaceae family and have similar leaf morphological characteristics. Those regions were also able to identify Viscum articulatum and other species belonging to Santalaceae family. These results suggested that the two DNA regions could become recommended universal DNA barcode for identifying teak mistletoe.

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  • IPB University
  • Padjadjaran University
  • National Research and Innovation Agency
  • Sunan Gunung Djati State Islamic University Bandung
  • Ministry of Environment and Forestry, Republic of Indonesia
  • Ehime University
  • Indonesian Institute of Sciences
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Rekan penulisOrganisasiArtikel bersama
Fifi Gus DwiyantiIPB University5
Irdika MansurIPB University4
Ulfah Juniarti SiregarIPB University3
Henti Hendalastuti RachmatNational Research and Innovation Agency3
Imam WahyudiIPB University3
Nurul KhumaidaIPB University2
Muhammad MajiiduIPB University2
Koichi KamiyaEhime University2
Kusumadewi Sri YulitaIndonesian Institute of Sciences2
Laswi IrmayantiKhairun University2
Prijanto PamoengkasIPB University2
Andi SukendroIPB University2
Luluk SetyaningsihUniversitas Nusa Bangsa2
Dede Jajat SudrajatNational Research and Innovation Agency2
Aditya NugrohoIPB University2
Henti RosdayantiNational Research and Innovation Agency2
Rhett D. HarissonAfiliasi tidak diketahui1
Suria Darma TariganIPB University1
Dodik Ridho NurrochmatIPB University1
Ishak YassirMinistry of Environment and Forestry, Republic of Indonesia1
Mangarah SilalahiIPB University1
Agus WahyudiMinistry of Environment and Forestry, Republic of Indonesia1
Lutfy AbdulahNational Research and Innovation Agency1
Suryanto SuryantoIPB University1
Isis IkhwansyahPadjadjaran University1
Fauzan Aziman AlhamidyPadjadjaran University1
Maret PriyantaPadjadjaran University1
Ida NurlindaPadjadjaran University1
Saeful KholikUniversitas Wiralodra1
Abubakar Muhammad JibrilIslamic University of Niger1
Asep NursobahSunan Gunung Djati State Islamic University Bandung1
Adang HambaliSunan Gunung Djati State Islamic University Bandung1
Nurwadjah Ahmad EQSunan Gunung Djati State Islamic University Bandung1
Uyu MuawwanahAfiliasi tidak diketahui1
Apud ApudUniversitas Islam Negeri Sultan Maulana Hasanuddin Banten1

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Sumber metadata: OAI-PMH (metadata jurnal) http://journal.biotrop.org/index.php/biotropia/oai, pertama di-harvest 8 Nov 2026, terakhir terlihat 8 Nov 2026.
Metadata asli (oai_dc) 
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	<dc:title xml:lang="en">DNA BARCODE CHARACTERIZATION OF MISTLETOE INFESTATION IN TEAK CLONAL SEED ORCHARD (CSO) IN PADANGAN, EAST JAVA PROVINCE, INDONESIA</dc:title>
	<dc:creator xml:lang="en">Muttaqin, Zainal</dc:creator>
	<dc:creator xml:lang="en">Budi, Sri Wilarso</dc:creator>
	<dc:creator xml:lang="en">Wasis, Basuki</dc:creator>
	<dc:creator xml:lang="en">Corryanti, Corryanti</dc:creator>
	<dc:creator xml:lang="en">Siregar, Iskandar Zulkarnaen</dc:creator>
	<dc:subject xml:lang="en">Clonal Seed Orchard</dc:subject>
	<dc:subject xml:lang="en">DNA barcode</dc:subject>
	<dc:subject xml:lang="en">matK</dc:subject>
	<dc:subject xml:lang="en">rbcL</dc:subject>
	<dc:subject xml:lang="en">teak mistletoe</dc:subject>
	<dc:description xml:lang="en">For effective teak plantation management, early detection system in controlling teak mistletoe requires various basic information, including degree of infestation and accuracy of the species names. Mistletoe infestations in teak and mistletoe species name have been reported, but there are still problems in identifying the correct species or subspecies due to morphological similarity. The objective of this study was to clarify the species identity of hemi-parasitic mistletoe plants, which were found in teak Clonal Seed Orchard (CSO) in Padangan, East Java Province, Indonesia using DNA barcodes. Species identification of teak mistletoe based on leaf morphological characteristics and universal DNA barcode regions (i.e. matK and rbcL) were carried out. The results showed that the Canonical Discriminant Analysis (CDA) could differentiate Dendrophthoe pentandra and Macrosolen tetragonus based on leaf morphological characteristics. Variables having high correlation to distinguish both species were length of petiole, width of the widest leaf, number of secondary leaf veins, leaf base shape, aspect ratio, form factor and perimeter ratio of diameter. The results of DNA barcoding showed that the two DNA barcode regions presented good amplification and sequence results. Both DNA barcode regions successfully differentiated two species i.e. D. pentandra and M. tetragonus which belong to Loranthaceae family and have similar leaf morphological characteristics. Those regions were also able to identify Viscum articulatum and other species belonging to Santalaceae family. These results suggested that the two DNA regions could become recommended universal DNA barcode for identifying teak mistletoe.</dc:description>
	<dc:publisher xml:lang="en">SEAMEO BIOTROP</dc:publisher>
	<dc:date>2017-08-31</dc:date>
	<dc:type>info:eu-repo/semantics/article</dc:type>
	<dc:type>info:eu-repo/semantics/publishedVersion</dc:type>
	<dc:format>application/pdf</dc:format>
	<dc:identifier>https://journal.biotrop.org/index.php/biotropia/article/view/651</dc:identifier>
	<dc:identifier>10.11598/btb.2017.24.2.651</dc:identifier>
	<dc:source xml:lang="en">BIOTROPIA; Vol. 24 No. 2 (2017): BIOTROPIA Vol. 24 No. 2 August 2017; 140 - 152</dc:source>
	<dc:source>1907-770X</dc:source>
	<dc:source>0215-6334</dc:source>
	<dc:source>10.11598/btb.2017.24.2.</dc:source>
	<dc:language>en</dc:language>
	<dc:relation>https://journal.biotrop.org/index.php/biotropia/article/view/651/348</dc:relation>
	<dc:rights xml:lang="en">Copyright (c) 2017 BIOTROPIA - The Southeast Asian Journal of Tropical Biology</dc:rights>
	<dc:rights xml:lang="en">http://creativecommons.org/licenses/by-nc-nd/4.0</dc:rights>
</oai_dc:dc>