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MORPHOLOGICAL AND MOLECULAR CHARACTERIZATION OF Donax faba (BIVALVIA: DONACIDAE) OBTAINED FROM KUTANG BEACH, LAMONGAN, INDONESIA

BIOTROPIA · Vol. 31 No. 2 (2024) · hlm. 238–252

DOI
10.11598/btb.2024.31.2.2143
ISSN
1907-770X, 0215-6334
Terbit
2024-08-07
Penerbit
SEAMEO BIOTROP
Bahasa
en
Lisensi
creativecommons.org/licenses/by-nc-nd/4.0

Abstrak

ARTICLE HIGLIGHTSThis study revealed 19 morphological variations of edible wedge clams, Donax faba (Bivalvia: Donacidae), from Kutang Beach, Lamongan, Indonesia, which has significant role as part of coastal ecosystem.This reseach also highlights the DNA barcoding of Donax faba based on COI gene (Cytochrome C Oxidase Subunit I).The average genetic distance of the research samples was 0.46%, while the value of this parameter between the research samples and the ingroup was found to be 1.51%. ABSTRACTDonax faba is a type of wedge clams with significant ecological and economic roles, as well as variations in color, pattern, and morphometric properties. Recently, a particular population of unidentified D. faba was reported from Kutang Beach, Lamongan, Indonesia. Therefore, this research aimed to assess the morphological variations and molecular characteristics of D. faba obtained from Kutang Beach based on COI gene. A total of 288 samples were collected during the lowest tide for morphological characterization of the color, pattern, and morphometrics of the shells. Additionally, molecular characterization was conducted based on the composition of nucleotide bases and amino acids of COI gene, genetic distance, as well as the relationships. The results showed that D. faba had 19 morphological variations, among which the most dominant type contained a whitish exterior with brown spots and a whitish purple interior. The average genetic distance of the samples was 0.46%, while the value was calculated as 1.51% between the samples and the ingroup. Automatic Barcode Gap Discovery (ABGD) analysis performed using a prior maximal distance of 0.001 showed the separation of these species into distinct categories.

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  • Universitas Negeri Surabaya
  • Universitas Airlangga
  • National Research and Innovation Agency
  • Sunan Gunung Djati State Islamic University Bandung
  • State University of Semarang
  • Indonesian Institute of Sciences
  • University of Technology Malaysia
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Rekan penulisOrganisasiArtikel bersama
Sabrina Brilianti SuhartonoUniversitas Negeri Surabaya1
Fara Salsa Refalina SidartaUniversitas Negeri Surabaya1
Kartika DewiNational Research and Innovation Agency1
Jadsna Rohma HanidaAfiliasi tidak diketahui1
Teguh Budi Raharjo Eko SaputraUniversitas Negeri Surabaya1
Mohamad Ichsana NurSunan Gunung Djati State Islamic University Bandung1
Novia Widianti KusumaningrumUniversitas Negeri Surabaya1
Winarsih WinarsihState University of Semarang1
Sunu KuntjoroUniversitas Negeri Surabaya1
Widowati BudijastutiUniversitas Negeri Surabaya1
Maharani Dyah ArumsariUniversitas Negeri Surabaya1
Ahmad Misbakhus SururiUniversitas Negeri Surabaya1
Excelino HendrataUniversitas Negeri Surabaya1
Rahmadian Kahfi Zulfa KamilaUniversitas Negeri Surabaya1
Dhea Mutiara Fernanda WibowoUniversitas Negeri Surabaya1
Luluatul FajriyahUniversitas Negeri Surabaya1
Hafiidh Haqqu NugrohoUniversitas Negeri Surabaya1
Nur Rohmatin IsnaningsihIndonesian Institute of Sciences1
RENI AMBARWATIUniversitas Negeri Surabaya1
Sapto AndriyonoUniversitas Airlangga1
Heru PramonoUniversitas Airlangga1
Catlya Tasya AdellaUniversitas Airlangga1
Mufasirin MufasirinUniversitas Airlangga1
Lailatul LutfiyahUniversitas Airlangga1
Nur Izzati Mohd NohUniversity of Technology Malaysia1
Cahya Ajeng Valentina SulungAfiliasi tidak diketahui1
Adam Dwi RanggaUniversitas Negeri Surabaya1
Viona Angelina Erlan PanjaitanUniversitas Negeri Surabaya1
Endik Deni NugrohoUniversitas Nahdlatul Ulama Pasuruan1
Rusdianto RusdiantoNational Research and Innovation Agency1
NOORHIDAYAH BINTI MAMATUniversity of Malaya1

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Sumber metadata: OAI-PMH (metadata jurnal) http://journal.biotrop.org/index.php/biotropia/oai, pertama di-harvest 8 Nov 2026, terakhir terlihat 8 Nov 2026.
Metadata asli (oai_dc) 
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	<dc:title xml:lang="en">MORPHOLOGICAL AND MOLECULAR CHARACTERIZATION OF Donax faba (BIVALVIA: DONACIDAE) OBTAINED FROM KUTANG BEACH, LAMONGAN, INDONESIA</dc:title>
	<dc:creator xml:lang="en">Ambarwati, Reni</dc:creator>
	<dc:creator xml:lang="en">Rachmadiarti, Fida</dc:creator>
	<dc:creator xml:lang="en">Fitrihidajati, Herlina</dc:creator>
	<dc:creator xml:lang="en">Purnomo, Tarzan</dc:creator>
	<dc:creator xml:lang="en">Rahayu, Dwi Anggorowati</dc:creator>
	<dc:creator xml:lang="en">Faizah, Ulfi</dc:creator>
	<dc:subject xml:lang="en">COI gene</dc:subject>
	<dc:subject xml:lang="en">DNA barcoding</dc:subject>
	<dc:subject xml:lang="en">wedge clam</dc:subject>
	<dc:subject xml:lang="en">coastal ecosystem</dc:subject>
	<dc:subject xml:lang="en">marine organisms</dc:subject>
	<dc:subject xml:lang="en">animal systematics</dc:subject>
	<dc:subject xml:lang="en">molluscs</dc:subject>
	<dc:subject xml:lang="en">bivalves</dc:subject>
	<dc:description xml:lang="en">ARTICLE HIGLIGHTSThis study revealed 19 morphological variations of edible wedge clams, Donax faba (Bivalvia: Donacidae), from Kutang Beach, Lamongan, Indonesia, which has significant role as part of coastal ecosystem.This reseach also highlights the DNA barcoding of Donax faba based on COI gene (Cytochrome C Oxidase Subunit I).The average genetic distance of the research samples was 0.46%, while the value of this parameter between the research samples and the ingroup was found to be 1.51%.
ABSTRACTDonax faba is a type of wedge clams with significant ecological and economic roles, as well as variations in color, pattern, and morphometric properties. Recently, a particular population of unidentified D. faba was reported from Kutang Beach, Lamongan, Indonesia. Therefore, this research aimed to assess the morphological variations and molecular characteristics of D. faba obtained from Kutang Beach based on COI gene. A total of 288 samples were collected during the lowest tide for morphological characterization of the color, pattern, and morphometrics of the shells. Additionally, molecular characterization was conducted based on the composition of nucleotide bases and amino acids of COI gene, genetic distance, as well as the relationships. The results showed that D. faba had 19 morphological variations, among which the most dominant type contained a whitish exterior with brown spots and a whitish purple interior. The average genetic distance of the samples was 0.46%, while the value was calculated as 1.51% between the samples and the ingroup. Automatic Barcode Gap Discovery (ABGD) analysis performed using a prior maximal distance of 0.001 showed the separation of these species into distinct categories.</dc:description>
	<dc:publisher xml:lang="en">SEAMEO BIOTROP</dc:publisher>
	<dc:date>2024-08-07</dc:date>
	<dc:type>info:eu-repo/semantics/article</dc:type>
	<dc:type>info:eu-repo/semantics/publishedVersion</dc:type>
	<dc:format>application/pdf</dc:format>
	<dc:format>text/xml</dc:format>
	<dc:identifier>https://journal.biotrop.org/index.php/biotropia/article/view/2143</dc:identifier>
	<dc:identifier>10.11598/btb.2024.31.2.2143</dc:identifier>
	<dc:source xml:lang="en">BIOTROPIA; Vol. 31 No. 2 (2024): BIOTROPIA Vol. 31 No. 2 August 2024; 238 - 252</dc:source>
	<dc:source>1907-770X</dc:source>
	<dc:source>0215-6334</dc:source>
	<dc:source>10.11598/btb.2024.31.2.</dc:source>
	<dc:language>en</dc:language>
	<dc:relation>https://journal.biotrop.org/index.php/biotropia/article/view/2143/799</dc:relation>
	<dc:relation>https://journal.biotrop.org/index.php/biotropia/article/view/2143/873</dc:relation>
	<dc:rights xml:lang="en">Copyright (c) 2024 Reni Ambarwati, Fida Rachmadiarti, Herlina Fitrihidajati, Tarzan Purnomo, Rofiza Yolanda, Dwi Anggorowati Rahayu, Ulfi Faizah</dc:rights>
	<dc:rights xml:lang="en">http://creativecommons.org/licenses/by-nc-nd/4.0</dc:rights>
</oai_dc:dc>