Jurnal SINTA 1
Cross-Species Amplification and Variability of Microsatellite DNA Markers in Domesticated Indonesian Mahseer; A Case Study with Tor soro, Tor douronensis and their Interspecific Hybrids
HAYATI Journal of Biosciences · Vol. 29 No. 3 (2022) · hlm. 409–416
- ISSN
- 2086-4094, 1978-3019
- Terbit
- 2022-03-25
- Penerbit
- Bogor Agricultural University, Indonesia
- Bahasa
- eng
Abstrak
Indonesian mahseer (Tor spp.) are freshwater species of high economic, cultural, and conservatory values. Owing to their high values and environmental degradation, the population of Tor fish gradually decreased, and domestication efforts have been made to conserve the population. This study was aimed to assess the cross-species amplification and microsatellite genetic diversity in Indonesian mahseer Tor soro (SS), Tor douronensis (DD), and their interspecific hybrids using primers developed for Tor putitora. Eleven primer sets were used to test for amplifiability and screen genetic diversity in 40 progenies derived from those three groups. Results showed that seven primer sets (64%) successfully amplified loci. Genetic screening using the three most consistently amplifying primers showed that the number of alleles in the three populations was low, ranging from 2 to 5 alleles. The observed heterozygosity (HO) was high ranging from 0.650 to 0.789, and the fixation index (FIS) was negative, indicating heterozygosity excess. In line with other parameters, the P-values of the HW parameter of several loci-population combinations were significantly departed from equilibrium (P <0.05). A few private alleles were observed in parental line DD and the hybrids. Overall, the cross-species primers developed from T. putitora were able to amplify loci in T. soro, T. douronensis and their hybrids and genetic diversity in the hybrid population was slightly higher than those in parental lines. Possible factors driving the phenomena and practical implications of these findings on the conservation measures are discussed.
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- Politeknik Pertanian Negeri Samarinda
- State University of Semarang
- Mulawarman University
- Universitas Nahdlatul Ulama Blitar
- Sekolah Tinggi Ilmu Tarbiyah Hamzah Al-Fansuri Sibolga Barus
- UIN Sunan Ampel Surabaya
- Hasanuddin University
- Organisasi lain
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- Organisasi berbeda
- Organisasi sama
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Tampilkan sebagai tabel
| Rekan penulis | Organisasi | Artikel bersama |
|---|---|---|
| Reza Rahmatulloh | Afiliasi tidak diketahui | 1 |
| Mukhammad Iqbal Ibrahim | Afiliasi tidak diketahui | 1 |
| Maya Rini Handayani | Afiliasi tidak diketahui | 1 |
| Nur Cahyo Hendro Wibowo | Afiliasi tidak diketahui | 1 |
| Eny Maria | Politeknik Pertanian Negeri Samarinda | 1 |
| Bagus Satria | Politeknik Pertanian Negeri Samarinda | 1 |
| Reza Andrea | Mulawarman University | 1 |
| Syafei Karim | Politeknik Pertanian Negeri Samarinda | 1 |
| Fajar Ramadhani | Politeknik Pertanian Negeri Samarinda | 1 |
| Suswanto Suswanto | Politeknik Pertanian Negeri Samarinda | 1 |
| Emil Riza Putra | Politeknik Pertanian Negeri Samarinda | 1 |
| Hasbi Sjamsir | Mulawarman University | 1 |
| Bagus Satria | Politeknik Pertanian Negeri Samarinda | 1 |
| Nuraini Nuraini | Politeknik Pertanian Negeri Samarinda | 1 |
| Sugianto Sugianto | Universitas Nahdlatul Ulama Blitar | 1 |
| Arif Widiyatmoko | State University of Semarang | 1 |
| Ani Rusilowati | State University of Semarang | 1 |
| Putut Marwoto | State University of Semarang | 1 |
| Sulhadi Sulhadi | Afiliasi tidak diketahui | 1 |
| Siti Noviyatun | Sekolah Tinggi Ilmu Tarbiyah Hamzah Al-Fansuri Sibolga Barus | 1 |
| Wahyu Jalaluddin | Afiliasi tidak diketahui | 1 |
| Nursidhi Nursidhi | Afiliasi tidak diketahui | 1 |
| Sri Rejeki Urip | Afiliasi tidak diketahui | 1 |
| Anastasia Pudjitriherwanti | Afiliasi tidak diketahui | 1 |
| Abdul Muhid | UIN Sunan Ampel Surabaya | 1 |
| Umi Baroroh | Afiliasi tidak diketahui | 1 |
| Dewi Astriany | Afiliasi tidak diketahui | 1 |
| Agus Budi Kurniawan | Afiliasi tidak diketahui | 1 |
| Elis Nurhasanah | Afiliasi tidak diketahui | 1 |
| Andi Amri | Hasanuddin University | 1 |
| Arli Aditya Parikesit | Indonesia International Institute for Life Sciences | 1 |
| David Agustriawan | Afiliasi tidak diketahui | 1 |
| Rizky Nurdiansyah | Afiliasi tidak diketahui | 1 |
| Desak Made Malini | Afiliasi tidak diketahui | 1 |
| Fajar Anggraeni | Afiliasi tidak diketahui | 1 |
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