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DNA Barcoding of Six Commercially Important Groupers (Epinephelidae) from Langsa, Aceh, Indonesia

HAYATI Journal of Biosciences · Vol. 31 No. 2 (2023) · hlm. 328–335

DOI
10.4308/hjb.31.2.328-335
ISSN
2086-4094, 1978-3019
Terbit
2023-11-29
Penerbit
Bogor Agricultural University, Indonesia
Bahasa
eng

Abstrak

Groupers are among the fish groups that are difficult to recognize due to their high morphological similarities. Therefore, molecular techniques, particularly DNA barcoding, are extensively utilized to differentiate this fish group. This study aimed to analyze and validate six grouper species belonging to the Epinephelidae family that were harvested from Langsa district waters in Aceh province, Indonesia, based on DNA barcode data. It was conducted from June to December 2021, with the fish specimens collected from fishers at fish landing sites and the fish market in Langsa City, Aceh province. A total of 22 grouper sequences belonging to six species were generated, namely Epinephelus coioides, E. bleekeri, E. malabaricus, E. erythrurus, E. sexfasciatus and Mycteroperca poecilonotus (formerly Epinephelus poecilonotus). Genetic distance within these species ranged from 0.10 to 0.73% (average: 0.40%). Notably, E. malabaricus and E. coioides exhibited the closest genetic kinship (4.07%), while E. sexfasciatus and M. poecilonotus displayed the greatest genetic distance (19.33%). This study provides the first DNA reference for grouper in Langsa district, Indonesia, with significant implications for future sustainable grouper management.

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  • Universitas Syiah Kuala
  • Universiti Malaysia Terengganu
  • Ministry of Marine Affairs and Fisheries
  • Universiti Sains Malaysia
  • Davao Oriental State University
  • Universitas Airlangga
  • National Research and Innovation Agency
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Tampilkan sebagai tabel
Rekan penulisOrganisasiArtikel bersama
Edison D. MacusiDavao Oriental State University8
Naufal AlkhalisUniversitas Syiah Kuala2
Haekal Azief HaridhiUniversitas Syiah Kuala2
Cut Nadilla MaretnaUniversitas Syiah Kuala2
Yudi HaditiarUniversitas Syiah Kuala2
Kris HandokoMinistry of Marine Affairs and Fisheries2
Intan MalayanaUniversitas Syiah Kuala2
Arsa Cindy SafitriUniversitas Syiah Kuala2
Wira DharmaUniversitas Syiah Kuala2
Yekki YasminUniversitas Syiah Kuala2
Nada AriqahUniversitas Syiah Kuala2
Anita RauzanaUniversitas Syiah Kuala2
Rahmad ZakariaUniversiti Sains Malaysia2
Sapto AndriyonoUniversitas Airlangga2
Husaini HusainiUniversitas Syiah Kuala1
Muhammad NandaUniversitas Syiah Kuala1
Maria UlfahUniversitas Syiah Kuala1
HusainiAfiliasi tidak diketahui1
Maria UlfahNational Research and Innovation Agency1
Muhammad NandaAfiliasi tidak diketahui1
Lenni FitriUniversitas Syiah Kuala1
Alia RizkiUniversitas Syiah Kuala1
Amirunnas AmirunnasUniversitas Syiah Kuala1
Zairin ThomyUniversitas Syiah Kuala1
Hendrix Indra KusumaUniversitas Syiah Kuala1
Hilmina ItawarnemiUniversitas Teuku Umar1
Muhammad Akbar MaulanaUniversitas Syiah Kuala1
Nurfadillah NurfadillahUniversitas Syiah Kuala1
Siswani SariAfiliasi tidak diketahui1
Hasfiandi HasfiandiAfiliasi tidak diketahui1

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Sumber metadata: OAI-PMH (metadata jurnal) http://journal.ipb.ac.id/index.php/hayati/oai, pertama di-harvest 8 Nov 2026, terakhir terlihat 8 Nov 2026.
Metadata asli (oai_dc) 
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	<dc:title xml:lang="en">DNA Barcoding of Six Commercially Important Groupers (Epinephelidae) from Langsa, Aceh, Indonesia</dc:title>
	<dc:creator xml:lang="en">Fadli, Nur</dc:creator>
	<dc:creator xml:lang="en">Jumiati, Sri</dc:creator>
	<dc:creator xml:lang="en">Razi, Nanda Muhammad</dc:creator>
	<dc:creator xml:lang="en">Damora, Adrian</dc:creator>
	<dc:creator xml:lang="en">Muchlisin, Zainal A.</dc:creator>
	<dc:creator xml:lang="en">Dewiyanti, Irma</dc:creator>
	<dc:creator xml:lang="en">Ramadhaniaty, Mutia</dc:creator>
	<dc:creator xml:lang="en">Harnelly, Essy</dc:creator>
	<dc:creator xml:lang="en">Habib, Ahasan</dc:creator>
	<dc:creator xml:lang="en">Siti-Azizah, Mohd Nor</dc:creator>
	<dc:description xml:lang="en">Groupers are among the fish groups that are difficult to recognize due to their high morphological similarities. Therefore, molecular techniques, particularly DNA barcoding, are extensively utilized to differentiate this fish group. This study aimed to analyze and validate six grouper species belonging to the Epinephelidae family that were harvested from Langsa district waters in Aceh province, Indonesia, based on DNA barcode data. It was conducted from June to December 2021, with the fish specimens collected from fishers at fish landing sites and the fish market in Langsa City, Aceh province. A total of 22 grouper sequences belonging to six species were generated, namely Epinephelus coioides, E. bleekeri, E. malabaricus, E. erythrurus, E. sexfasciatus and Mycteroperca poecilonotus (formerly Epinephelus poecilonotus). Genetic distance within these species ranged from 0.10 to 0.73% (average: 0.40%). Notably, E. malabaricus and E. coioides exhibited the closest genetic kinship (4.07%), while E. sexfasciatus and M. poecilonotus displayed the greatest genetic distance (19.33%). This study provides the first DNA reference for grouper in Langsa district, Indonesia, with significant implications for future sustainable grouper management.</dc:description>
	<dc:publisher xml:lang="en">Bogor Agricultural University, Indonesia</dc:publisher>
	<dc:date>2023-11-29</dc:date>
	<dc:type>info:eu-repo/semantics/article</dc:type>
	<dc:type>info:eu-repo/semantics/publishedVersion</dc:type>
	<dc:type xml:lang="en">Peer-reviewed Article</dc:type>
	<dc:format>application/pdf</dc:format>
	<dc:identifier>http://journal.ipb.ac.id/hayati/article/view/48262</dc:identifier>
	<dc:identifier>10.4308/hjb.31.2.328-335</dc:identifier>
	<dc:source xml:lang="en">HAYATI Journal of Biosciences; Vol. 31 No. 2 (2024): March 2024; 328-335</dc:source>
	<dc:source>2086-4094</dc:source>
	<dc:source>1978-3019</dc:source>
	<dc:language>eng</dc:language>
	<dc:relation>http://journal.ipb.ac.id/hayati/article/view/48262/26702</dc:relation>
	<dc:rights xml:lang="en">Copyright (c) 2023 Nur Fadli, Sri Jumiati, Nanda Muhammad Razi, Adrian Damora, Zainal A. Muchlisin, Irma Dewiyanti, Mutia Ramadhaniaty, Essy Harnelly, Ahasan Habib, Mohd Nor Siti-Azizah</dc:rights>
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