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Variation of Musa spp. in West Kalimantan, Indonesia, Based on rbcL Chloroplast DNA

HAYATI Journal of Biosciences · Vol. 31 No. 5 (2024) · hlm. 942–950

DOI
10.4308/hjb.31.5.942-950
ISSN
2086-4094, 1978-3019
Terbit
2024-06-12
Penerbit
Bogor Agricultural University, Indonesia
Bahasa
eng

Abstrak

West Kalimantan is home to Musa spp. conservation and genetic assessment of wild banana relatives are important for future breeding purposes. The present study aims to evaluate the genetic relationship of Musa spp. in West Kalimantan by analyzing the rbcL chloroplast DNA using phylogenetic analysis. The methods in this study were sampling, DNA extraction, PCR of rbcL fragment, and data analysis. The specific primer was used to amplify the rbcL chloroplast DNA of ten accessions of Musa spp. in West Kalimantan. The results showed that the area of the rbcL region of Musa spp. in this study was estimated at 587-591 bp. It showed high variability with a conservation level A+T content of 56.95%. The rbcL sequences of Musa spp. have polymorphic sites on 13 numbers of nucleotides. The phylogenetic analysis with an ML algorithm of 35 Musa spp. from West Kalimantan and GenBank data was successfully divided into 4 main clades, and the bootstrap value was 80-81%. This study is expected beneficial for taxonomic, conservation, and banana breeding efforts.

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  • Politeknik Negeri Ujung Pandang
  • Indonesia University of Education
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Hanum Mukti RahayuAfiliasi tidak diketahui4
Adriani AdrianaAfiliasi tidak diketahui2
Muhammad FakihuddinAfiliasi tidak diketahui2
Laili Fitri YeniAfiliasi tidak diketahui1
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Luqman Abdan SyakuranAfiliasi tidak diketahui1
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Febriana Nur FiqihAfiliasi tidak diketahui1
Fransiska Dena LorenzaAfiliasi tidak diketahui1
Syamsiwna SyamsiwnaAfiliasi tidak diketahui1
Resti AprianiAfiliasi tidak diketahui1
Friti May SandiAfiliasi tidak diketahui1
Nurhayati NurhayatiPoliteknik Negeri Ujung Pandang1
Meutia SolehahAfiliasi tidak diketahui1
Anandita Eka SetiadiAfiliasi tidak diketahui1
Julita JulitaIndonesia University of Education1
Hanum Mukti HanumAfiliasi tidak diketahui1
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. DorlyAfiliasi tidak diketahui1
Dini HadiartiAfiliasi tidak diketahui1
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Sumber metadata: OAI-PMH (metadata jurnal) http://journal.ipb.ac.id/index.php/hayati/oai, pertama di-harvest 8 Nov 2026, terakhir terlihat 8 Nov 2026.
Metadata asli (oai_dc) 
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	<dc:title xml:lang="en">Variation of Musa spp. in West Kalimantan, Indonesia, Based on rbcL Chloroplast DNA</dc:title>
	<dc:creator xml:lang="en">Sunandar, Ari</dc:creator>
	<dc:creator xml:lang="en">Fajri, Hayatul</dc:creator>
	<dc:creator xml:lang="en">Qurbaniah, Mahwar</dc:creator>
	<dc:description xml:lang="en">West Kalimantan is home to Musa spp. conservation and genetic assessment of wild banana relatives are important for future breeding purposes. The present study aims to evaluate the genetic relationship of Musa spp. in West Kalimantan by analyzing the rbcL chloroplast DNA using phylogenetic analysis. The methods in this study were sampling, DNA extraction, PCR of rbcL fragment, and data analysis. The specific primer was used to amplify the rbcL chloroplast DNA of ten accessions of Musa spp. in West Kalimantan. The results showed that the area of the rbcL region of Musa spp. in this study was estimated at 587-591 bp. It showed high variability with a conservation level A+T content of 56.95%. The rbcL sequences of Musa spp. have polymorphic sites on 13 numbers of nucleotides. The phylogenetic analysis with an ML algorithm of 35 Musa spp. from West Kalimantan and GenBank data was successfully divided into 4 main clades, and the bootstrap value was 80-81%. This study is expected beneficial for taxonomic, conservation, and banana breeding efforts.</dc:description>
	<dc:publisher xml:lang="en">Bogor Agricultural University, Indonesia</dc:publisher>
	<dc:date>2024-06-12</dc:date>
	<dc:type>info:eu-repo/semantics/article</dc:type>
	<dc:type>info:eu-repo/semantics/publishedVersion</dc:type>
	<dc:type xml:lang="en">Peer-reviewed Article</dc:type>
	<dc:format>application/pdf</dc:format>
	<dc:identifier>http://journal.ipb.ac.id/hayati/article/view/50135</dc:identifier>
	<dc:identifier>10.4308/hjb.31.5.942-950</dc:identifier>
	<dc:source xml:lang="en">HAYATI Journal of Biosciences; Vol. 31 No. 5 (2024): September 2024; 942-950</dc:source>
	<dc:source>2086-4094</dc:source>
	<dc:source>1978-3019</dc:source>
	<dc:language>eng</dc:language>
	<dc:relation>http://journal.ipb.ac.id/hayati/article/view/50135/28289</dc:relation>
	<dc:rights xml:lang="en">Copyright (c) 2024 Ari Sunandar, Hayatul Fajri, Mahwar Qurbaniah</dc:rights>
</oai_dc:dc>