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Characterization of Some Commercially Important Octopus (Mollusca: Cephalopoda) from Indonesian Waters using Mitochondrial DNA Cytochrome Oxidase Sub-Unit I (Mt-DNA COI)

ILMU KELAUTAN: Indonesian Journal of Marine Sciences · Vol. 26 No. 1 (2021) · hlm. 17–26

DOI
10.14710/ik.ijms.26.1.17-26
ISSN
2406-7598, 0853-7291
Terbit
2021-03-07
Penerbit
Marine Science Department Diponegoro University
Bahasa
eng
Lisensi
creativecommons.org/licenses/by-sa/4.0

Abstrak

As per the FAO data, octopus identification is very limited in the species level at world fishery and also they are cryptic nature. On the other hand, Indonesia is one of the top ten highest octopus exporters. This study therefore aimed to determine the species of octopus based on phylogenetic analysis of mt-DNA COI. Octopuses were collected from nine different locations throughout Indonesia, i.e., Anambas, Bangka-Belitung, Cirebon, Karimunjawa, Tuban, Lombok, Buton, Wakatobi and Jayapura. Samples were mostly in the form of tentacles that were directly collected from fishermen. After being preserved in 96% ethanol, the sample was extracted in 10% chelexÒ, PCR amplification using Folmer’s primer then was further analysed by sequencing in Sanger methods. Of the 24 samples sequenced, the results recognized four species Octopodidae belongs to the three genera, named Amphioctopus aegina, Hapalochlaena fasciata, Octopus laqueus and Octopus cyanea. Mean pair-wise distances of within-species were ranged from 0 to 5.5 % and between-species was ranged from 12.9 to 15.8 %. This study distinctly confirmed the difference between genus Amphioctopus and Hapalochlaena (15.5 %), as also between O. laqueus and O. cyanea (12.9%) which was previously not completely distinguished. Although performing species identification using DNA sequences for shallow-water benthic octopus species is perhaps considered premature, this study indicated the possible application of COI sequences for species identification, thereby providing a preliminary dataset for future DNA barcoding of octopus, in particular for Indonesia waters.

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Rekan penulisOrganisasiArtikel bersama
Nining NursalimAfiliasi tidak diketahui5
Wilis Ari SetyatiAfiliasi tidak diketahui4
Ni Kadek Dita CahyaniAfiliasi tidak diketahui4
Diah Permata WijayantiAfiliasi tidak diketahui3
Muggi BachtiarAfiliasi tidak diketahui3
Agus TriantoAfiliasi tidak diketahui3
Ervia YudiatiDiponegoro University2
Rabia AlghazeerAfiliasi tidak diketahui2
Wilis A SetyatiAfiliasi tidak diketahui2
Ali RidloAfiliasi tidak diketahui2
Ria AzizahAfiliasi tidak diketahui2
Marita Ika JoesidawatiAfiliasi tidak diketahui2
Jasiel Junior KarosekaliAfiliasi tidak diketahui2
Almay Atsiil Harits SyamAfiliasi tidak diketahui2
Agus SabdonoDiponegoro University2
OCKY KARNA RADJASAAfiliasi tidak diketahui2
Sunar SunarAfiliasi tidak diketahui1
Sutrisno AnggoroDiponegoro University1
Husna El IksirohAfiliasi tidak diketahui1
Henna Rya AbdurachimAfiliasi tidak diketahui1
Mostafa Imhmed IghwerbAfiliasi tidak diketahui1
Nuril AzharAfiliasi tidak diketahui1
Ichoun Brawici DhewangAfiliasi tidak diketahui1
Ita WidowatiAfiliasi tidak diketahui1
Umbu Domu WoraAfiliasi tidak diketahui1
Fanny Iriany GinzelAfiliasi tidak diketahui1
Muhammad ZainuriDiponegoro University1
Hermin Pancasakti KusumaningrumAfiliasi tidak diketahui1
Azalia Puspa HeridaAfiliasi tidak diketahui1
Candra WahyuningsihAfiliasi tidak diketahui1
Dwi Haryo IsmunartiAfiliasi tidak diketahui1
Ria Azizah TNAfiliasi tidak diketahui1
Elis IndrayantiAfiliasi tidak diketahui1
Diah Permata WAfiliasi tidak diketahui1
Ali DjunaediAfiliasi tidak diketahui1
Irwani IrwaniAfiliasi tidak diketahui1
Eka Maya KurniasihAfiliasi tidak diketahui1

Afiliasi berasal dari OpenAlex; metadata OAI-PMH jurnal tidak memuatnya. Penulis tanpa ID OpenAlex dicocokkan berdasarkan nama, sehingga dua orang bisa tergabung atau satu orang bisa terpisah.

Sumber metadata: OAI-PMH (metadata jurnal) http://ejournal.undip.ac.id/index.php/ijms/oai, pertama di-harvest 8 Nov 2026, terakhir terlihat 8 Nov 2026.
Metadata asli (oai_dc)
<oai_dc:dc xmlns="http://www.openarchives.org/OAI/2.0/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:oai_dc="http://www.openarchives.org/OAI/2.0/oai_dc/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.openarchives.org/OAI/2.0/oai_dc/  http://www.openarchives.org/OAI/2.0/oai_dc.xsd">
	<dc:title xml:lang="en-US">Characterization of Some Commercially Important Octopus (Mollusca: Cephalopoda) from Indonesian Waters using Mitochondrial DNA Cytochrome Oxidase Sub-Unit I (Mt-DNA COI)</dc:title>
	<dc:creator>Kholilah, Nenik</dc:creator>
	<dc:creator>Afiati, Norma</dc:creator>
	<dc:creator>Subagiyo, Subagiyo</dc:creator>
	<dc:subject xml:lang="en-US">Indonesia waters; Octopus; Mt-DNA; COI</dc:subject>
	<dc:description xml:lang="en-US">As per the FAO data, octopus identification is very limited in the species level at world fishery and also they are cryptic nature. On the other hand, Indonesia is one of the top ten highest octopus exporters. This study therefore aimed to determine the species of octopus based on phylogenetic analysis of mt-DNA COI. Octopuses were collected from nine different locations throughout Indonesia, i.e., Anambas, Bangka-Belitung, Cirebon, Karimunjawa, Tuban, Lombok, Buton, Wakatobi and Jayapura. Samples were mostly in the form of tentacles that were directly collected from fishermen. After being preserved in 96% ethanol, the sample was extracted in 10% chelexÒ, PCR amplification using Folmer’s primer then was further analysed by sequencing in Sanger methods. Of the 24 samples sequenced, the results recognized four species Octopodidae belongs to the three genera, named Amphioctopus aegina, Hapalochlaena fasciata, Octopus laqueus and Octopus cyanea. Mean pair-wise distances of within-species were ranged from 0 to 5.5 % and between-species was ranged from 12.9 to 15.8 %. This study distinctly confirmed the difference between genus Amphioctopus and Hapalochlaena (15.5 %), as also between O. laqueus and O. cyanea (12.9%) which was previously not completely distinguished. Although performing species identification using DNA sequences for shallow-water benthic octopus species is perhaps considered premature, this study indicated the possible application of COI sequences for species identification, thereby providing a preliminary dataset for future DNA barcoding of octopus, in particular for Indonesia waters.</dc:description>
	<dc:publisher xml:lang="en-US">Marine Science Department Diponegoro University</dc:publisher>
	<dc:date>2021-03-07</dc:date>
	<dc:type>info:eu-repo/semantics/article</dc:type>
	<dc:type>info:eu-repo/semantics/publishedVersion</dc:type>
	<dc:type xml:lang="en-US"></dc:type>
	<dc:format>application/pdf</dc:format>
	<dc:identifier>https://ejournal.undip.ac.id/index.php/ijms/article/view/35226</dc:identifier>
	<dc:identifier>10.14710/ik.ijms.26.1.17-26</dc:identifier>
	<dc:source xml:lang="en-US">ILMU KELAUTAN: Indonesian Journal of Marine Sciences; Vol 26, No 1 (2021): Ilmu Kelautan; 17-26</dc:source>
	<dc:source>2406-7598</dc:source>
	<dc:source>0853-7291</dc:source>
	<dc:language>eng</dc:language>
	<dc:relation>https://ejournal.undip.ac.id/index.php/ijms/article/view/35226/pdf</dc:relation>
	<dc:rights xml:lang="en-US">Copyright (c) 2021 ILMU KELAUTAN: Indonesian Journal of Marine Sciences</dc:rights>
	<dc:rights xml:lang="en-US">https://creativecommons.org/licenses/by-sa/4.0</dc:rights>
</oai_dc:dc>