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Genetic Diversity of Indigofera tinctoria L. in Java and Madura Islands as Natural Batik Dye based on Inter-simple Sequence Repeat Markers

Journal of Mathematical and Fundamental Sciences · Vol. 49 No. 2 (2017) · hlm. 105–115

DOI
10.5614/j.math.fund.sci.2017.49.2.1
ISSN
2338-5510, 2337-5760
Terbit
2017-10-03
Penerbit
Directorate for Research and Innovation (DRI) ITB
Bahasa
eng

Abstrak

Indigo leaves (Indigofera tinctoria L.) are utilized as a source of batik dye in Java and Madura islands, Indonesia. Batik makers from the islands collect indigo leaves from wild plants. Continuous collection of wild plants from their natural habitat may decrease their diversity. The present research was conducted to analyze the genetic diversity and population structure of I. tinctoria L. from Java and Madura. 55 indigo accessions were collected from 10 locations in Java and Madura. The indigo DNA was extracted and amplified using 15 ISSR primers. A total of 123 bands showed 50-90% polymorphic loci. PCA and UPGMA were used to analyze the data. All indigo accessions were clustered into 4 groups at a 60% similarity coefficient: a group consisting of Madura accessions, a group consisting of East Java accessions, a group consisting of Central Java accessions, and a group consisting of West Java accessions. Accessions collected from the same or adjacent populations tended to show similar ISSR characteristics. The genetic diversity of indigo in Java and Madura islands is relatively high (%P = 68.3), but the diversity residing within each population is lower (37%) than that between populations (63%).

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  • Universitas Papua
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Arifin Surya Dwipa IrsyamAfiliasi tidak diketahui6
Peniwidiyanti PeniwidiyantiAfiliasi tidak diketahui6
Rina Ratnasih IrwantoAfiliasi tidak diketahui4
BAMBANG SURYOBROTOAfiliasi tidak diketahui4
Asih Perwita DewiAfiliasi tidak diketahui3
Prima Wahyu Kusuma HutabaratAfiliasi tidak diketahui2
Dwi SetyantiAfiliasi tidak diketahui2
Nina Ratna DjuitaAfiliasi tidak diketahui2
SRI BUDIARTIAfiliasi tidak diketahui2
Eneng Nunuz RohmatullayalyAfiliasi tidak diketahui2
Yuzuru HamadaAfiliasi tidak diketahui2
Rizmoon Nurul ZulkarnaenAfiliasi tidak diketahui2
Lutfi RahmaningtiyasAfiliasi tidak diketahui2
Dian RosleineAfiliasi tidak diketahui2
Sulistijorini SulistijoriniAfiliasi tidak diketahui2
. MIFTAHUDINAfiliasi tidak diketahui2
Inggar DamayantiAfiliasi tidak diketahui1
Melza MulyaniAfiliasi tidak diketahui1
Irvan Fadli WandaAfiliasi tidak diketahui1
Dipta Sumeru RinandioAfiliasi tidak diketahui1
Wendy Achmad MustaqimAfiliasi tidak diketahui1
Kusnadi KusnadiAfiliasi tidak diketahui1
Irfan MartiansyahAfiliasi tidak diketahui1
Eni YuhaeniAfiliasi tidak diketahui1
Himmah RustiamiNational Research and Innovation Agency1
Miftahudin MiftahudinAfiliasi tidak diketahui1
I Putu Gede P. DamayantoAfiliasi tidak diketahui1
Muhamad JunaidiAfiliasi tidak diketahui1
Tri AtmowidiAfiliasi tidak diketahui1
Pudji WidodoAfiliasi tidak diketahui1
Yayan Wahyu Candra KusumaAfiliasi tidak diketahui1
FitmawatiAfiliasi tidak diketahui1
TETRI WIDIYANIAfiliasi tidak diketahui1
Elda Irma Jeanne Joice KawulurUniversitas Papua1
J PERRY GUSTAFSONAfiliasi tidak diketahui1
. DASUMIATIAfiliasi tidak diketahui1
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Sumber metadata: OAI-PMH (metadata jurnal) https://journals.itb.ac.id/index.php/jmfs/oai, pertama di-harvest 9 Nov 2026, terakhir terlihat 9 Nov 2026.
Metadata asli (oai_dc) 
<oai_dc:dc xmlns="http://www.openarchives.org/OAI/2.0/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:oai_dc="http://www.openarchives.org/OAI/2.0/oai_dc/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.openarchives.org/OAI/2.0/oai_dc/  http://www.openarchives.org/OAI/2.0/oai_dc.xsd">
	<dc:title xml:lang="en-US">Genetic Diversity of Indigofera tinctoria L. in Java and Madura Islands as Natural Batik Dye based on Inter-simple Sequence Repeat Markers</dc:title>
	<dc:creator>Hariri, Muhammad Rifqi</dc:creator>
	<dc:creator>Chikmawati, Tatik</dc:creator>
	<dc:creator>Hartana, Alex</dc:creator>
	<dc:subject xml:lang="en-US">indigo</dc:subject>
	<dc:subject xml:lang="en-US">genetic diversity</dc:subject>
	<dc:subject xml:lang="en-US">polymorphic bands</dc:subject>
	<dc:subject xml:lang="en-US">population structure</dc:subject>
	<dc:description xml:lang="en-US">Indigo leaves (Indigofera tinctoria L.) are utilized as a source of batik dye in Java and Madura islands, Indonesia. Batik makers from the islands collect indigo leaves from wild plants. Continuous collection of wild plants from their natural habitat may decrease their diversity. The present research was conducted to analyze the genetic diversity and population structure of I. tinctoria L. from Java and Madura. 55 indigo accessions were collected from 10 locations in Java and Madura. The indigo DNA was extracted and amplified using 15 ISSR primers. A total of 123 bands showed 50-90% polymorphic loci. PCA and UPGMA were used to analyze the data. All indigo accessions were clustered into 4 groups at a 60% similarity coefficient: a group consisting of Madura accessions, a group consisting of East Java accessions, a group consisting of Central Java accessions, and a group consisting of West Java accessions. Accessions collected from the same or adjacent populations tended to show similar ISSR characteristics. The genetic diversity of indigo in Java and Madura islands is relatively high (%P = 68.3), but the diversity residing within each population is lower (37%) than that between populations (63%).</dc:description>
	<dc:publisher xml:lang="en-US">Directorate for Research and Innovation (DRI) ITB</dc:publisher>
	<dc:date>2017-10-03</dc:date>
	<dc:type>info:eu-repo/semantics/article</dc:type>
	<dc:type>info:eu-repo/semantics/publishedVersion</dc:type>
	<dc:format>application/pdf</dc:format>
	<dc:identifier>https://journals.itb.ac.id/index.php/jmfs/article/view/1928</dc:identifier>
	<dc:identifier>10.5614/j.math.fund.sci.2017.49.2.1</dc:identifier>
	<dc:source xml:lang="en-US">Journal of Mathematical and Fundamental Sciences; Vol. 49 No. 2 (2017); 105-115</dc:source>
	<dc:source>2338-5510</dc:source>
	<dc:source>2337-5760</dc:source>
	<dc:source>10.5614/j.math.fund.sci.2017.49.2</dc:source>
	<dc:language>eng</dc:language>
	<dc:relation>https://journals.itb.ac.id/index.php/jmfs/article/view/1928/2794</dc:relation>
</oai_dc:dc>