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Filogenetik Jenis-jenis Annonaceae dari Jawa Timur Koleksi Kebun Raya Purwodadi Berdasarkan Coding dan Non-coding sekuen DNA

Journal of Tropical Biodiversity and Biotechnology · Vol. 3 No. 1 (2018) · hlm. 1–7

DOI
10.22146/jtbb.28308
ISSN
2540-9581, 2540-9573
Terbit
2018-04-03
Penerbit
Universitas Gadjah Mada
Bahasa
eng
Lisensi
creativecommons.org/licenses/by-sa/4.0

Abstrak

Annonaceae species of Purwodadi Botanic Garden collections from East Java encountered problems in species identification based on morphological characters. In addition, the unavailability of molecular data to support identification based on morphological characters hinders accurate identification of species. The aim of this research is to discern phylogenetic of Annonaceae species from East Java collections of Purwodadi Botanic Garden based on coding and non-coding sequence DNA. Annonaceae species used in this study are 30 species, includes outgroup from family of Magnoliaceae. Materials for DNA analysis were young leaves which were processed through DNA extraction, DNA amplification through PCR technique, DNA sequencing and data analysis with Maximum Likelihood (ML), Maximum Parsimony (MP) and Neighbour-Joining (NJ) method analysis. The results show that phylogenetic tree is divided into two subfamilies, i.e. Annonoideae and Malmeoideae. The topology of phylogenetic tree from three DNA molecular marker shows that non-coding sequence DNA (trnL-F molecular marker) has the best grouping of relationship and be able to explain the relationship between species of Annonaceae than rbcL and matK molecular marker as coding sequence DNA. Bootstrap value of trnL-F tree is very weak to high (36-100%) while rbcL is very weak to weak (17-63%) and matK tree is high (98-99%).

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  • University of Brawijaya
  • Indonesian Institute of Sciences
  • Muhammadiyah University of Makassar
  • Universitas Islam Negeri Maulana Malik Ibrahim
  • National University of East Timor
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Rekan penulisOrganisasiArtikel bersama
Amin Setyo LeksonoUniversity of Brawijaya2
Herawati HerawatiUniversity of Brawijaya2
Riska Putri QurotaayuinaUniversity of Brawijaya1
FauziahMuhammadiyah University of Makassar1
Abban Putri FiqaIndonesian Institute of Sciences1
Sugeng BudihartaIndonesian Institute of Sciences1
Lia HapsariIndonesian Institute of Sciences1
Agung Sri DarmayantiIndonesian Institute of Sciences1
Sri WidyartiAfiliasi tidak diketahui1
Nunung HarijatiAfiliasi tidak diketahui1
Jehan Ramdani HaryatiAfiliasi tidak diketahui1
Siti SofiahAfiliasi tidak diketahui1
Didik WahyudiUniversitas Islam Negeri Maulana Malik Ibrahim1
Isna Arofatun NikmahUniversity of Brawijaya1
Shofiyatul Mas’udahIndonesian Institute of Sciences1
Fauziah FauziahIndonesian Institute of Sciences1
Suharjono SuharjonoAfiliasi tidak diketahui1
Nindi Nazula FajariniAfiliasi tidak diketahui1
Luchman HakimUniversity of Brawijaya1
Estri Laras ArumingtyasAfiliasi tidak diketahui1
Filza Yulina AdeAfiliasi tidak diketahui1
Irfan MustafaUniversity of Brawijaya1
Afifah Nur AiniUniversity of Brawijaya1
Nice de Deus da CruzUniversity of Brawijaya1
Hermenegildo Ribeiro da CostaNational University of East Timor1
Estri Laras ArumingtyasUniversity of Brawijaya1
Riza Nensy MarantikaUniversity of Brawijaya1

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Sumber metadata: OAI-PMH (metadata jurnal) https://jurnal.ugm.ac.id/jtbb/oai, pertama di-harvest 9 Nov 2026, terakhir terlihat 9 Nov 2026.
Metadata asli (oai_dc) 
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	<dc:title xml:lang="en-US">Filogenetik Jenis-jenis Annonaceae dari Jawa Timur Koleksi Kebun Raya Purwodadi Berdasarkan Coding dan Non-coding sekuen DNA</dc:title>
	<dc:creator>Lestari, Dewi Ayu</dc:creator>
	<dc:creator>Azrianingsih, Rodiyati</dc:creator>
	<dc:creator>Hendrian, H.</dc:creator>
	<dc:subject xml:lang="en-US">Annonaceae, coding DNA, non-coding DNA, phylogenetic</dc:subject>
	<dc:description xml:lang="en-US">Annonaceae species of Purwodadi Botanic Garden collections from East Java encountered problems in species identification based on morphological characters. In addition, the unavailability of molecular data to support identification based on morphological characters hinders accurate identification of species. The aim of this research is to discern phylogenetic of Annonaceae species from East Java collections of Purwodadi Botanic Garden based on coding and non-coding sequence DNA. Annonaceae species used in this study are 30 species, includes outgroup from family of Magnoliaceae. Materials for DNA analysis were young leaves which were processed through DNA extraction, DNA amplification through PCR technique, DNA sequencing and data analysis with Maximum Likelihood (ML), Maximum Parsimony (MP) and Neighbour-Joining (NJ) method analysis. The results show that phylogenetic tree is divided into two subfamilies, i.e. Annonoideae and Malmeoideae. The topology of phylogenetic tree from three DNA molecular marker shows that non-coding sequence DNA (trnL-F molecular marker) has the best grouping of relationship and be able to explain the relationship between species of Annonaceae than rbcL and matK molecular marker as coding sequence DNA. Bootstrap value of trnL-F tree is very weak to high (36-100%) while rbcL is very weak to weak (17-63%) and matK tree is high (98-99%).</dc:description>
	<dc:publisher xml:lang="en-US">Universitas Gadjah Mada</dc:publisher>
	<dc:contributor xml:lang="en-US"></dc:contributor>
	<dc:date>2018-04-03</dc:date>
	<dc:type>info:eu-repo/semantics/article</dc:type>
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	<dc:format>application/pdf</dc:format>
	<dc:identifier>https://journal.ugm.ac.id/jtbb/article/view/28308</dc:identifier>
	<dc:identifier>10.22146/jtbb.28308</dc:identifier>
	<dc:source xml:lang="en-US">Journal of Tropical Biodiversity and Biotechnology; Vol 3, No 1 (2018): April; 1-7</dc:source>
	<dc:source>2540-9581</dc:source>
	<dc:source>2540-9573</dc:source>
	<dc:language>eng</dc:language>
	<dc:relation>https://journal.ugm.ac.id/jtbb/article/view/28308/20567</dc:relation>
	<dc:rights xml:lang="en-US">Copyright (c) 2018 Journal of Tropical Biodiversity and Biotechnology</dc:rights>
	<dc:rights xml:lang="en-US">http://creativecommons.org/licenses/by-sa/4.0</dc:rights>
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