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DNA Barcode of Barred Mudskipper (Periophthalmus argentilineatus Valenciennes, 1837) from Tekolok Estuary (West Nusa Tenggara, Indonesia) and Their Phylogenetic Relationship with Other Indonesian Barred Mudskippers

Journal of Tropical Biodiversity and Biotechnology · Vol. 6 No. 2 (2021)

DOI
10.22146/jtbb.59702
ISSN
2540-9581, 2540-9573
Terbit
2021-05-20
Penerbit
Universitas Gadjah Mada
Bahasa
eng
Lisensi
creativecommons.org/licenses/by-sa/4.0

Abstrak

Barred mudskipper (Periophthalmus argentilineatus) has a potency to be developed as protein for human consumption and ornamental fish. The fish also has an important role in mangrove ecosystems. Nevertheless, many barred mudskippers have been considered a cryptic species. Therefore, accurate identification is needed to clarify species identification of the barred mudskipper using DNA barcoding. This research aimed to identify barred mudskippers from Tekolok Estuary (East Lombok, West Nusa Tenggara, Indonesia) using COI mitochondrial gene as a DNA barcode and analyze genetic relationship with other barred mudskippers from several regions of Indonesia recorded in GenBank. This study used a PCR method with universal primers FishF2 and FishR2. The data was then analysed using DNASTAR, BLAST, Mesquite, MEGA, DnaSP, BEAST, GenAlEx, and NETWORK. The results revealed that barred mudskipper from Tekolok Estuary has been verified as Periophthalmus argentilineatus. The results also exhibited that P. argentilineatus from Tekolok Estuary has a close genetic relationship to P.argentilineatus from Tukad Bilukpoh (Jembrana, Bali). In addition, phylogenetic analysis showed that P.argentilineatus from Indonesia consisted of two clades with a genetic distance of approximately 6.64%. This analysis revealed evidence of the cryptic diversity of P.argentilineatus from Indonesia. Further detailed studies are needed to clarify whether Indonesian P.argentilineatus should be categorized into more than one species or single species with several subspecies.

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  • Universitas Gadjah Mada
  • Universitas Islam Negeri Ar-Raniry
  • Indonesian Institute of Sciences
  • Institut Teknologi Sepuluh Nopember
  • UIN Sunan Ampel Surabaya
  • Indonesia Open University
  • Universitas Syiah Kuala
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Rekan penulisOrganisasiArtikel bersama
Katon Waskito AjiUniversitas Gadjah Mada6
Dwi Sendi PriyonoUniversitas Gadjah Mada4
Diana FebriyantiUniversitas Gadjah Mada3
Budi Setiadi DaryonoUniversitas Gadjah Mada2
Rury EprilurahmanUniversitas Gadjah Mada2
Zuliyati RohmahUniversitas Gadjah Mada2
Amir HamidyIndonesian Institute of Sciences2
Rosichon UbaidillahIndonesian Institute of Sciences2
Chastine FatichahInstitut Teknologi Sepuluh Nopember1
Siti RochimahInstitut Teknologi Sepuluh Nopember1
KusnadiIndonesia Open University1
I Nengah Surati JayaAfiliasi tidak diketahui1
Nining PuspaningsihAfiliasi tidak diketahui1
Makin BasukiAfiliasi tidak diketahui1
Muji BurrahmadAfiliasi tidak diketahui1
Edy MarsudiAfiliasi tidak diketahui1
Muji BurrahmadUniversitas Syiah Kuala1
Edy MarsudiAfiliasi tidak diketahui1
Lukman Nuzul HakimNational Research and Innovation Agency1
Subyantoro SubyantoroAfiliasi tidak diketahui1
Bakhtiar BakhtiarAfiliasi tidak diketahui1
Erita HayatiAfiliasi tidak diketahui1
Sabaruddin ZakariaAfiliasi tidak diketahui1
Happy SaputraUniversitas Islam Negeri Ar-Raniry1
Sapuan HusniUniversitas Islam Negeri Ar-Raniry1
Ali Sajjad BaalyUIN Sunan Ampel Surabaya1
Abu Bakar YamaniUIN Sunan Ampel Surabaya1
Khairani KhairaniUniversitas Islam Negeri Ar-Raniry1
Khairuddin HasballahAfiliasi tidak diketahui1
Sayuthi M. AminAfiliasi tidak diketahui1
Riza Afrian MustaqiemAfiliasi tidak diketahui1
Andi RahmanAfiliasi tidak diketahui1
Murodi MurodiAfiliasi tidak diketahui1
Adib Fakhruddin YusufUniversitas Gadjah Mada1
Vida Rahma LatifahUniversitas Gadjah Mada1
Vivi Indah NurcahyatiUniversitas Gadjah Mada1

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Sumber metadata: OAI-PMH (metadata jurnal) https://jurnal.ugm.ac.id/jtbb/oai, pertama di-harvest 9 Nov 2026, terakhir terlihat 9 Nov 2026.
Metadata asli (oai_dc) 
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	<dc:title xml:lang="en-US">DNA Barcode of Barred Mudskipper (Periophthalmus argentilineatus Valenciennes, 1837) from Tekolok Estuary (West Nusa Tenggara, Indonesia) and Their Phylogenetic Relationship with Other Indonesian Barred Mudskippers</dc:title>
	<dc:creator>Rha'ifa, Febrina Amaliya</dc:creator>
	<dc:creator>Audrea, Deiandra Jasmine</dc:creator>
	<dc:creator>Hakim, Lukman</dc:creator>
	<dc:creator>Arisuryanti, Tuty</dc:creator>
	<dc:subject xml:lang="en-US">Genetics; Fish Genetics</dc:subject>
	<dc:subject xml:lang="en-US">barred mudskipper; cryptic diversity; DNA barcode; polymorphism</dc:subject>
	<dc:description xml:lang="en-US">Barred mudskipper (Periophthalmus argentilineatus) has a potency to be developed as protein for human consumption and ornamental fish. The fish also has an important role in mangrove ecosystems. Nevertheless, many barred mudskippers have been considered a cryptic species. Therefore, accurate identification is needed to clarify species identification of the barred mudskipper using DNA barcoding.  This research aimed to identify barred mudskippers from Tekolok Estuary (East Lombok, West Nusa Tenggara, Indonesia) using COI mitochondrial gene as a DNA barcode and analyze genetic relationship with other barred mudskippers from several regions of Indonesia recorded in GenBank. This study used a PCR method with universal primers FishF2 and FishR2.  The data was then analysed using DNASTAR, BLAST, Mesquite, MEGA, DnaSP, BEAST, GenAlEx, and NETWORK. The results revealed that barred mudskipper from Tekolok Estuary has been verified as Periophthalmus argentilineatus. The results also exhibited that P. argentilineatus from Tekolok Estuary has a close genetic relationship to P.argentilineatus from Tukad Bilukpoh (Jembrana, Bali).  In addition, phylogenetic analysis showed that P.argentilineatus from Indonesia consisted of two clades with a genetic distance of approximately 6.64%. This analysis revealed evidence of the cryptic diversity of P.argentilineatus from Indonesia. Further detailed studies are needed to clarify whether Indonesian P.argentilineatus should be categorized into more than one species or single species with several subspecies.</dc:description>
	<dc:publisher xml:lang="en-US">Universitas Gadjah Mada</dc:publisher>
	<dc:contributor xml:lang="en-US"></dc:contributor>
	<dc:date>2021-05-20</dc:date>
	<dc:type>info:eu-repo/semantics/article</dc:type>
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	<dc:type xml:lang="en-US"></dc:type>
	<dc:format>application/pdf</dc:format>
	<dc:identifier>https://journal.ugm.ac.id/jtbb/article/view/59702</dc:identifier>
	<dc:identifier>10.22146/jtbb.59702</dc:identifier>
	<dc:source xml:lang="en-US">Journal of Tropical Biodiversity and Biotechnology; Vol 6, No 2 (2021): August; jtbb59702</dc:source>
	<dc:source>2540-9581</dc:source>
	<dc:source>2540-9573</dc:source>
	<dc:language>eng</dc:language>
	<dc:relation>https://journal.ugm.ac.id/jtbb/article/view/59702/31291</dc:relation>
	<dc:relation>https://journal.ugm.ac.id/jtbb/article/downloadSuppFile/59702/13337</dc:relation>
	<dc:relation>https://journal.ugm.ac.id/jtbb/article/downloadSuppFile/59702/13338</dc:relation>
	<dc:coverage xml:lang="en-US">Indonesia; South East Asia</dc:coverage>
	<dc:coverage xml:lang="en-US"></dc:coverage>
	<dc:coverage xml:lang="en-US"></dc:coverage>
	<dc:rights xml:lang="en-US">Copyright (c) 2021 Journal of Tropical Biodiversity and Biotechnology</dc:rights>
	<dc:rights xml:lang="en-US">http://creativecommons.org/licenses/by-sa/4.0</dc:rights>
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