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Analysis of Soil Bacterial Diversity from Tropical Rainforest and Oil Palm Plantation In Jambi, Indonesia by 16S rRNA-DGGE Profiles

Journal of Tropical Biodiversity and Biotechnology · Vol. 7 No. 2 (2022)

DOI
10.22146/jtbb.68820
ISSN
2540-9581, 2540-9573
Terbit
2022-07-27
Penerbit
Universitas Gadjah Mada
Bahasa
eng
Lisensi
creativecommons.org/licenses/by-sa/4.0

Abstrak

Oil palm plantations are the most invasive land use changes in Southeast Asia. It must have affected unique natural biodiversity. This study aimed to investigate the diversity of soil bacteria based on 16S rRNA gene profiles from tropical forest and oil palm plantation in Jambi Province, Indonesia. Soil sample was taken from tropical forest and oil palm plantation from Jambi province, Indonesia. The forest site is in Bukit Duabelas National Park, and the nearby oil palm plantation is in Sarolangun District, Jambi Province, Indonesia. The diversity of bacterial communities from topsoil was studied using Denaturing gradient gel electrophoresis (DGGE) of 16S rRNA gene and common biodiversity indices. PCR amplification of 16S rRNA gene was successfully conducted primers-using 33F/ 518R primers. Phylogenetic approach was used for revealing the community shift of bacterial phyla and genera in both areas. Phylogenetic analysis showed there were 4 phyla of bacteria i.e., Firmicutes, Alphaproteobacteria, Gammaproteobacteria, and Actinobacteria, respectively. Actinobacteria was the most dominant group in both areas. The composition of soil bacterial community in the oil palm plantation, based on total number of bands 16S rRNA generated from DGGE was richer than that in the Bukit Dua Belas National Park. It was probably caused by plantation year circle more than 10 years and routine activities during the plantation management, such as applications of agricultural lime, herbicide and fertilizer.

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  • University of Bengkulu
  • IPB University
  • National Research and Innovation Agency
  • Universitas Islam Negeri Maulana Malik Ibrahim
  • Universitas Pattimura
  • Indonesian Center for Agricultural Biotechnology and Genetic Resource Research and Development
  • Universitas Papua
  • Organisasi lain
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Rekan penulisOrganisasiArtikel bersama
Antonius SuwantoIPB University8
Aris Tri WahyudiIPB University6
Welly DarwisUniversity of Bengkulu4
Rika Indri AstutiIPB University4
Maggy Thenawidjaya SuhartonoIPB University4
Riziq Ilham NurfahmiAfiliasi tidak diketahui4
Dian Fita LestariUniversity of Bengkulu3
Sri BudiartiIPB University3
Alina AkhdiyaIndonesian Center for Agricultural Biotechnology and Genetic Resource Research and Development3
Laksmi AmbarsariIPB University2
Hamim HamimUniversitas Islam Negeri Maulana Malik Ibrahim2
Dedy Duryadi SolihinIPB University2
Cecilia Anna SeumahuUniversitas Pattimura2
Bayu PranataUniversitas Papua2
Aradea Bujana KusumaNational Sun Yat-sen University2
Jarulis JarulisUniversity of Bengkulu2
Annisa Prastika SupriyantoUniversity of Bengkulu2
Rochmah SupriatiUniversity of Bengkulu2
Putri Hezekiel Claracia SimanjuntakUniversity of Bengkulu2
Fatimatuzzahra FatimatuzzahraUniversity of Bengkulu2
Yar JohanUniversity of Bengkulu2
Riziq Ilham Nur FahmiUniversity of Bengkulu2
Denny KurniawanUniversity of Bengkulu2
Putri Hezekiel Claracia SimanjuntakUniversity of Bengkulu2
Santi Nurul KamilahUniversity of Bengkulu1
Widya C. ManurungAfiliasi tidak diketahui1
Hery HaryantoAfiliasi tidak diketahui1
Choirul MuslimAfiliasi tidak diketahui1
Sakina Maya MaulawiIPB University1
Santi Nurul KamilahUniversity of Bengkulu1
Fepta AryantiUniversity of Bengkulu1
Siti Azzira RahmaIPB University1
Lisdar A ManafIPB University1
Iah Novi MaslahahIPB University1

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Sumber metadata: OAI-PMH (metadata jurnal) https://jurnal.ugm.ac.id/jtbb/oai, pertama di-harvest 9 Nov 2026, terakhir terlihat 9 Nov 2026.
Metadata asli (oai_dc) 
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	<dc:title xml:lang="en-US">Analysis of Soil Bacterial Diversity from Tropical Rainforest and Oil Palm Plantation In Jambi, Indonesia by 16S rRNA-DGGE Profiles</dc:title>
	<dc:creator>wibowo, Risky Hadi</dc:creator>
	<dc:creator>Mubarik, Nisa Rachmania</dc:creator>
	<dc:creator>Rusmana, Iman</dc:creator>
	<dc:creator>Suhartono, Maggy Thenawidjaya</dc:creator>
	<dc:creator>Sipriyadi, Sipriyadi</dc:creator>
	<dc:creator>Masrukhin, Masrukhin</dc:creator>
	<dc:subject xml:lang="en-US">Biology</dc:subject>
	<dc:subject xml:lang="en-US">16 S rRNA; denaturing gradient gel electrophoresis (DGGE); oil palm plantation; soil bacterial community</dc:subject>
	<dc:description xml:lang="en-US">Oil palm plantations are the most invasive land use changes in Southeast Asia. It must have affected unique natural biodiversity. This study aimed to investigate the diversity of soil bacteria based on 16S rRNA gene profiles from tropical forest and oil palm plantation in Jambi Province, Indonesia. Soil sample was taken from tropical forest and oil palm plantation from Jambi province, Indonesia. The forest site is in Bukit Duabelas National Park, and the nearby oil palm plantation is in Sarolangun District, Jambi Province, Indonesia. The diversity of bacterial communities from topsoil was studied using Denaturing gradient gel electrophoresis (DGGE) of 16S rRNA gene and common biodiversity indices. PCR amplification of 16S rRNA gene was successfully conducted primers-using 33F/ 518R primers. Phylogenetic approach was used for revealing the community shift of bacterial phyla and genera in both areas. Phylogenetic analysis showed there were 4 phyla of bacteria i.e., Firmicutes, Alphaproteobacteria, Gammaproteobacteria, and Actinobacteria, respectively. Actinobacteria was the most dominant group in both areas. The composition of soil bacterial community in the oil palm plantation, based on total number of bands 16S rRNA generated from DGGE was richer than that in the Bukit Dua Belas National Park. It was probably caused by plantation year circle more than 10 years and routine activities during the plantation management, such as applications of agricultural lime, herbicide and fertilizer. </dc:description>
	<dc:publisher xml:lang="en-US">Universitas Gadjah Mada</dc:publisher>
	<dc:contributor xml:lang="en-US">DIPA BIOTROP 2016 (SEAMEO BIOTROP) PhD Grant with contract number: 0044.26/PSRP/SC/SPK-PNLT/III/2016</dc:contributor>
	<dc:date>2022-07-27</dc:date>
	<dc:type>info:eu-repo/semantics/article</dc:type>
	<dc:type>info:eu-repo/semantics/publishedVersion</dc:type>
	<dc:type xml:lang="en-US"></dc:type>
	<dc:format>application/pdf</dc:format>
	<dc:identifier>https://journal.ugm.ac.id/jtbb/article/view/68820</dc:identifier>
	<dc:identifier>10.22146/jtbb.68820</dc:identifier>
	<dc:source xml:lang="en-US">Journal of Tropical Biodiversity and Biotechnology; Vol 7, No 2 (2022): August; jtbb68820</dc:source>
	<dc:source>2540-9581</dc:source>
	<dc:source>2540-9573</dc:source>
	<dc:language>eng</dc:language>
	<dc:relation>https://journal.ugm.ac.id/jtbb/article/view/68820/34264</dc:relation>
	<dc:relation>https://journal.ugm.ac.id/jtbb/article/downloadSuppFile/68820/18480</dc:relation>
	<dc:coverage xml:lang="en-US">South East Asia</dc:coverage>
	<dc:coverage xml:lang="en-US"></dc:coverage>
	<dc:coverage xml:lang="en-US">soil sample</dc:coverage>
	<dc:rights xml:lang="en-US">Copyright (c) 2022 Journal of Tropical Biodiversity and Biotechnology</dc:rights>
	<dc:rights xml:lang="en-US">http://creativecommons.org/licenses/by-sa/4.0</dc:rights>
</oai_dc:dc>