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Cryptic Diversity of Barred Mudskippers, Periophthalmus argentilineatus (Valenciennes, 1837), from the Southern Coast of Java and East Lombok, Indonesia inferred by COI Mitochondrial Gene

Journal of Tropical Biodiversity and Biotechnology · Vol. 9 No. 3 (2024)

DOI
10.22146/jtbb.84328
ISSN
2540-9581, 2540-9573
Terbit
2024-07-15
Penerbit
Universitas Gadjah Mada
Bahasa
eng
Lisensi
creativecommons.org/licenses/by-sa/4.0

Abstrak

The Barred Mudskipper (P. argentilineatus) is an amphibious fish species that displays fully terrestrial behaviour during low tides. Previous studies have indicated the existence of cryptic species of the barred mudskipper, leading to difficulties in taxonomic identification due to similarities in morphological characteristics. Therefore, this study aimed to generate DNA barcodes for Indonesian barred mudskipper populations. We collected ten specimens from Clungup Beach and Kondang Bandung Beach, representing our samples. Additionally, we incorporated 25 previously collected COI sequences from Indonesia into our analysis. The mitochondrial COI gene was amplified using PCR and analysed using various bioinformatics programs. This study provides evidence for the presence of three genetically distinct clades (A, B, and C) within the P. argentilineatus population in Indonesia, with a deep genetic divergence of 2.41% to 6.12%. Clade A showed a high genetic divergence of 5.51-6.12%, suggesting the presence of a cryptic species consistent with previous studies. The high level of haplotype diversity and low nucleotide diversity observed in each clade suggest a population bottleneck followed by a rapid expansion. The lack of geographical separation in the haplotype network analysis indicates that gene flow between populations may have been facilitated by glaciation events in the past. These findings contribute to a better understanding of the biodiversity of the barred mudskipper species in Indonesia and will aid in the accurate identification of cryptic species. This study highlights the importance of using molecular techniques to complement morphological identification in understanding the evolution and diversity of mudskipper fish species.

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  • Universitas Gadjah Mada
  • IPB University
  • Indonesian Institute of Sciences
  • Politeknik Bina Husada Kendari
  • Universitas Airlangga
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Rekan penulisOrganisasiArtikel bersama
Budi Setiadi DaryonoUniversitas Gadjah Mada4
Lukman HakimUniversitas Gadjah Mada3
Amir HamidyIndonesian Institute of Sciences3
Tasya NuraliyahUniversitas Gadjah Mada3
Vindi DwijayantiUniversitas Gadjah Mada3
Rury EprilurahmanUniversitas Gadjah Mada2
Zuliyati RohmahUniversitas Gadjah Mada2
Rosichon UbaidillahIndonesian Institute of Sciences2
Deiandra Jasmine AudreaUniversitas Gadjah Mada2
Karmilah KarmilahPoliteknik Bina Husada Kendari1
Anggun Diyan NurhasanahUniversitas Gadjah Mada1
Madyan Akmal HidayatUniversitas Gadjah Mada1
Muslifah HasanahUniversitas Gadjah Mada1
Ganies Riza AristyaUniversitas Gadjah Mada1
Adib Fakhruddin YusufUniversitas Gadjah Mada1
Adristi Shafa WidyasariUniversitas Gadjah Mada1
Niken Satuti Nur HandayaniUniversitas Gadjah Mada1
Ananto Puradi NainggolanUniversitas Gadjah Mada1
Vida Rahma LatifahUniversitas Gadjah Mada1
Vivi Indah NurcahyatiUniversitas Gadjah Mada1
Aldy Riau Wansyah HasibuanUniversitas Gadjah Mada1
Arini Dian PratiwiUniversitas Gadjah Mada1
Rindu AurantikaUniversitas Gadjah Mada1
Indra LesmanaUniversitas Gadjah Mada1
Fanni KhoirillahUniversitas Gadjah Mada1
Dedy Duryadi SolihinIPB University1
Bambang PurwantaraIPB University1
Achmad FarajallahIPB University1
Anjar Tri WibowoUniversitas Airlangga1
Warisatul IlmiUniversitas Gadjah Mada1
Rika Lathif HasanUniversitas Gadjah Mada1
Khadija Lung AyuUniversitas Gadjah Mada1
Nofita RatmanUniversitas Gadjah Mada1

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Sumber metadata: OAI-PMH (metadata jurnal) https://jurnal.ugm.ac.id/jtbb/oai, pertama di-harvest 9 Nov 2026, terakhir terlihat 9 Nov 2026.
Metadata asli (oai_dc) 
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	<dc:title xml:lang="en-US">Cryptic Diversity of Barred Mudskippers, Periophthalmus argentilineatus (Valenciennes, 1837), from the Southern Coast of Java and East Lombok, Indonesia inferred by COI Mitochondrial Gene</dc:title>
	<dc:creator>Arisuryanti, Tuty</dc:creator>
	<dc:creator>Aji, Katon Waskito</dc:creator>
	<dc:creator>Herawati, Happy</dc:creator>
	<dc:creator>Sari, Indah Paramita</dc:creator>
	<dc:creator>Rha’ifa, Febrina Amaliya</dc:creator>
	<dc:creator>Febriyanti, Diana</dc:creator>
	<dc:creator>Priyono, Dwi Sendi</dc:creator>
	<dc:subject xml:lang="en-US">Biology; Genetics</dc:subject>
	<dc:subject xml:lang="en-US">Barred mudskipper; Cryptic species; COI-mtDNA</dc:subject>
	<dc:description xml:lang="en-US">The Barred Mudskipper (P. argentilineatus) is an amphibious fish species that displays fully terrestrial behaviour during low tides. Previous studies have indicated the existence of cryptic species of the barred mudskipper, leading to difficulties in taxonomic identification due to similarities in morphological characteristics. Therefore, this study aimed to generate DNA barcodes for Indonesian barred mudskipper populations. We collected ten specimens from Clungup Beach and Kondang Bandung Beach, representing our samples. Additionally, we incorporated 25 previously collected COI sequences from Indonesia into our analysis. The mitochondrial COI gene was amplified using PCR and analysed using various bioinformatics programs. This study provides evidence for the presence of three genetically distinct clades (A, B, and C) within the P. argentilineatus population in Indonesia, with a deep genetic divergence of 2.41% to 6.12%. Clade A showed a high genetic divergence of 5.51-6.12%, suggesting the presence of a cryptic species consistent with previous studies. The high level of haplotype diversity and low nucleotide diversity observed in each clade suggest a population bottleneck followed by a rapid expansion. The lack of geographical separation in the haplotype network analysis indicates that gene flow between populations may have been facilitated by glaciation events in the past. These findings contribute to a better understanding of the biodiversity of the barred mudskipper species in Indonesia and will aid in the accurate identification of cryptic species. This study highlights the importance of using molecular techniques to complement morphological identification in understanding the evolution and diversity of mudskipper fish species. </dc:description>
	<dc:publisher xml:lang="en-US">Universitas Gadjah Mada</dc:publisher>
	<dc:contributor xml:lang="en-US"></dc:contributor>
	<dc:date>2024-07-15</dc:date>
	<dc:type>info:eu-repo/semantics/article</dc:type>
	<dc:type>info:eu-repo/semantics/publishedVersion</dc:type>
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	<dc:format>application/pdf</dc:format>
	<dc:identifier>https://journal.ugm.ac.id/jtbb/article/view/84328</dc:identifier>
	<dc:identifier>10.22146/jtbb.84328</dc:identifier>
	<dc:source xml:lang="en-US">Journal of Tropical Biodiversity and Biotechnology; Vol 9, No 3 (2024): September; jtbb84328</dc:source>
	<dc:source>2540-9581</dc:source>
	<dc:source>2540-9573</dc:source>
	<dc:language>eng</dc:language>
	<dc:relation>https://journal.ugm.ac.id/jtbb/article/view/84328/39382</dc:relation>
	<dc:relation>https://journal.ugm.ac.id/jtbb/article/downloadSuppFile/84328/26588</dc:relation>
	<dc:relation>https://journal.ugm.ac.id/jtbb/article/downloadSuppFile/84328/26589</dc:relation>
	<dc:coverage xml:lang="en-US">Indonesia</dc:coverage>
	<dc:coverage xml:lang="en-US"></dc:coverage>
	<dc:coverage xml:lang="en-US"></dc:coverage>
	<dc:rights xml:lang="en-US">Copyright (c) 2024 Journal of Tropical Biodiversity and Biotechnology</dc:rights>
	<dc:rights xml:lang="en-US">http://creativecommons.org/licenses/by-sa/4.0</dc:rights>
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