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SiDREB2-based SNAP Marker-Assisted and Multi-Trait Selection in The Early Generation of Foxtail Millet (Setaria italica L. Beauv.)

Journal of Tropical Biodiversity and Biotechnology · Vol. 9 No. 3 (2024)

DOI
10.22146/jtbb.90407
ISSN
2540-9581, 2540-9573
Terbit
2024-07-19
Penerbit
Universitas Gadjah Mada
Bahasa
eng
Lisensi
creativecommons.org/licenses/by-sa/4.0

Abstrak

Setaria italica L. or foxtail millet is known for its nutritious grains and adaptability to unfavorable environmental conditions. High productivity, early heading, medium stature, and tolerance to drought- or salinity stress are among the breeding objectives for foxtail millet. The objective of this study was to select F3 families of foxtail millet from the cross of Botok-10xICERI-6 by weighted selection index and assisted by SiDREB2-based SNAP marker. Genotyping of 178 F3 families using the SiDREB2-based SNAP marker resulted in 29 A/A genotypes, 121 A/G genotypes, and 28 G/G genotypes. Further evaluation was conducted on 48 F3 families consisting of 27 A/A genotypes and 21 A/G genotypes in an augmented randomized complete block design together with their parental genotypes (Botok-10xICERI-6) and three check genotypes (Mauliru-2, NTB-1, and Toraja). Plant height and heading time had high broad-sense heritability, whereas grain weight per plant had a moderate broad-sense heritability. Ten potential F3 families were selected based on a weighted selection index with 20% intensity, comprised of seven A/G genotypes and three A/A genotypes with a weighted selection index ranging from 0.84 to 3.76. The F3 family with pedigree numbers B10I6-15-136, B10I6-15-161, and B10I6-15-70 with A/A genotypes are considered putative transgressive segregants and could be continued to the next generation for further breeding process.

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  • IPB University
  • National Research and Innovation Agency
  • Indonesian Agency for Agricultural Research and Development
  • Universitas Airlangga
  • Muhammadiyah University of Yogyakarta
  • Universiti Malaysia Terengganu
  • Yamaguchi University
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Rekan penulisOrganisasiArtikel bersama
Hajrial AswidinnoorIPB University6
M Reza PahleviIPB University4
Bambang Sapta PurwokoIPB University4
Marisa Vidya LuthfianiIPB University3
Nurul KhumaidaIPB University2
Iswari Saraswati DewiNational Research and Innovation Agency2
Munif GhulamahdiIPB University2
Indrastuti Apri RumantiNational Research and Innovation Agency2
Trias SitaresmiAfiliasi tidak diketahui2
Wage Ratna RohaeniIndonesian Agency for Agricultural Research and Development1
Untung SusantoIndonesian Agency for Agricultural Research and Development1
TRIKOESOEMANINGTYAS TRIKOESOEMANINGTYASIPB University1
Yudhistira NugrahaNational Research and Innovation Agency1
Suwarno SuwarnoUniversitas Airlangga1
Muhamad SyukurIPB University1
Rahmi Henda YaniIPB University1
Syaifullah RahimIPB University1
Ika RoostikaNational Research and Innovation Agency1
Dwi Arizna ArofahIPB University1
Natasya NafilaIPB University1
Ahmad JunaediIPB University1
Siti NurhidayahIPB University1
Iskandar LubisIPB University1
Siti YuriyahNational Research and Innovation Agency1
Hayu Widi YuanaIPB University1
Cucu GunarsihAfiliasi tidak diketahui1
Budi Indra SetiawanIPB University1
RudiyantoAfiliasi tidak diketahui1
Chusnul ArifIPB University1
Satyanto Krido SaptomoIPB University1
Muhamad AskariMuhammadiyah University of Yogyakarta1
AdlanIPB University1
RusiantoUniversiti Malaysia Terengganu1
Koremasa TamuraAfiliasi tidak diketahui1
Hiroshi MatsudaYamaguchi University1
Za’aziza Ridha JuliaIPB University1

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Sumber metadata: OAI-PMH (metadata jurnal) https://jurnal.ugm.ac.id/jtbb/oai, pertama di-harvest 9 Nov 2026, terakhir terlihat 9 Nov 2026.
Metadata asli (oai_dc) 
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	<dc:title xml:lang="en-US">SiDREB2-based SNAP Marker-Assisted and Multi-Trait Selection in The Early Generation of Foxtail Millet (Setaria italica L. Beauv.)</dc:title>
	<dc:creator>Butarbutar, Lidya Kristina Sari</dc:creator>
	<dc:creator>Syawaluddin, Dwi Dana</dc:creator>
	<dc:creator>Suwarno, Willy Bayuardi</dc:creator>
	<dc:creator>Ardie, Sintho Wahyuning</dc:creator>
	<dc:subject xml:lang="en-US">Molecular Biotechnology; Plant Breeding</dc:subject>
	<dc:subject xml:lang="en-US">Drought; Cereals; Functional food; Molecular marker; Salinity; Underutilized crop</dc:subject>
	<dc:description xml:lang="en-US">Setaria italica L. or foxtail millet is known for its nutritious grains and adaptability to unfavorable environmental conditions. High productivity, early heading, medium stature, and tolerance to drought- or salinity stress are among the breeding objectives for foxtail millet. The objective of this study was to select F3 families of foxtail millet from the cross of Botok-10xICERI-6 by weighted selection index and assisted by SiDREB2-based SNAP marker. Genotyping of 178 F3 families using the SiDREB2-based SNAP marker resulted in 29 A/A genotypes, 121 A/G genotypes, and 28 G/G genotypes. Further evaluation was conducted on 48 F3 families consisting of 27 A/A genotypes and 21 A/G genotypes in an augmented randomized complete block design together with their parental genotypes (Botok-10xICERI-6) and three check genotypes (Mauliru-2, NTB-1, and Toraja). Plant height and heading time had high broad-sense heritability, whereas grain weight per plant had a moderate broad-sense heritability. Ten potential F3 families were selected based on a weighted selection index with 20% intensity, comprised of seven A/G genotypes and three A/A genotypes with a weighted selection index ranging from 0.84 to 3.76. The F3 family with pedigree numbers B10I6-15-136, B10I6-15-161, and B10I6-15-70 with A/A genotypes are considered putative transgressive segregants and could be continued to the next generation for further breeding process. </dc:description>
	<dc:publisher xml:lang="en-US">Universitas Gadjah Mada</dc:publisher>
	<dc:contributor xml:lang="en-US"></dc:contributor>
	<dc:date>2024-07-19</dc:date>
	<dc:type>info:eu-repo/semantics/article</dc:type>
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	<dc:format>application/pdf</dc:format>
	<dc:identifier>https://journal.ugm.ac.id/jtbb/article/view/90407</dc:identifier>
	<dc:identifier>10.22146/jtbb.90407</dc:identifier>
	<dc:source xml:lang="en-US">Journal of Tropical Biodiversity and Biotechnology; Vol 9, No 3 (2024): September; jtbb90407</dc:source>
	<dc:source>2540-9581</dc:source>
	<dc:source>2540-9573</dc:source>
	<dc:language>eng</dc:language>
	<dc:relation>https://journal.ugm.ac.id/jtbb/article/view/90407/39388</dc:relation>
	<dc:relation>https://journal.ugm.ac.id/jtbb/article/downloadSuppFile/90407/29754</dc:relation>
	<dc:relation>https://journal.ugm.ac.id/jtbb/article/downloadSuppFile/90407/29755</dc:relation>
	<dc:coverage xml:lang="en-US">South East Asia</dc:coverage>
	<dc:coverage xml:lang="en-US"></dc:coverage>
	<dc:coverage xml:lang="en-US">Plant</dc:coverage>
	<dc:rights xml:lang="en-US">Copyright (c) 2024 Journal of Tropical Biodiversity and Biotechnology</dc:rights>
	<dc:rights xml:lang="en-US">http://creativecommons.org/licenses/by-sa/4.0</dc:rights>
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