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Genomic and Haplotype Comparison of Butanol Producing Bacteria Based on 16S rDNA

Journal of Tropical Life Science : International Journal of Theoretical, Experimental, and Applied Life Sciences · Vol. 6 No. 1 (2016) · hlm. 1–6

DOI
10.11594/jtls.06.01.01
ISSN
2527-4376, 2087-5517
Terbit
2016-03-04
Penerbit
Journal of Tropical Life Science
Bahasa
eng

Abstrak

High butanol demand for transportation was support to butanol development. Exploration of butanol producing bacteria using genome comparison and biogeography give role to butanol industrialization. Objective of this research are butanol production, genome comparison and haplotype analysis of butanol producing bacteria from Ranu Pani Lake sediment using 16S rDNA sequences. Highest butanol concentrations were resulted by Paenibacillus polymyxaRP 2.2 isolate (10.34 ± 0.00 g.l-1) then Bacillusmethylotrophicus RP 3.2 and Bacillusmethylotrophicus RP 7.2 isolate (10.11 ± 0.01 g.l-1 and 9.63 ± 0.01 g.l-1). Number of bases (T, C, A, G) of group 1 are similar, but different with group 2. Least G+C content is Clostridium saccharobutylicum Ox29 (51.35%) and highest is Bacillus methylotrophicus RP 7.2. Conserve region (1044 bp) of 16S rDNA higher then variative region (367 bp). The number of 319 bp is PIS whereas single tone as much as 48 bp. There are 17 conserves sequences. All of butanol producing bacterial sequences was clustered to 8 haplotype. Based on source of bacteria, there are three group of haplotype. Group A was isolated from Asia, group B was isolated from America and group C was isolated from Europe.

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  • University of Brawijaya
  • Badan Pengkajian dan Penerapan Teknologi
  • Lambung Mangkurat University
  • National Research and Innovation Agency
  • Universitas Airlangga
  • Hasanuddin University
  • Japan Tobacco (Japan)
  • Afiliasi tidak diketahui
  • Organisasi berbeda
  • Organisasi sama
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Rekan penulisOrganisasiArtikel bersama
Is HeliantiNational Research and Innovation Agency2
Hasria AlangHasanuddin University1
Joni KusnadiUniversity of Brawijaya1
Try ArdyatiAfiliasi tidak diketahui1
Evi OctavianyUniversity of Brawijaya1
Irfan MustafaUniversity of Brawijaya1
Maria UlfahBadan Pengkajian dan Penerapan Teknologi1
Niknik NurhayatiNational Research and Innovation Agency1
Dadang SuhendarBadan Pengkajian dan Penerapan Teknologi1
Anita Kusuma FinalissariBadan Pengkajian dan Penerapan Teknologi1
Ajeng Astrini BrahmantiUniversity of Brawijaya1
Erryana MartatiUniversity of Brawijaya1
Syamsika TahirUniversity of Brawijaya1
Widya Dwi Rukmi PutriUniversity of Brawijaya1
Rofiq SunaryantoBadan Pengkajian dan Penerapan Teknologi1
Ellen Fenix GunawanUniversity of Brawijaya1
Tri Yudani Mardining RarasUniversity of Brawijaya1
Mauludy Jutta AjrullahUniversity of Brawijaya1
Nadya Shafa PramestiUniversity of Brawijaya1
Sumarno Reto PrawiroUniversity of Brawijaya1
Fatchiyah FatchiyahUniversity of Brawijaya1
Bambang SetiawanLambung Mangkurat University1
Takeshi OhtaJapan Tobacco (Japan)1
Vita AgustinaUniversity of Brawijaya1
Muhammad Darwin PrenggonoLambung Mangkurat University1
Ratih Pratiwi SariUniversitas Airlangga1
Aditya Maulana Perdana PutraLambung Mangkurat University1
Mahardian RahmadiUniversitas Airlangga1
Bagyo YanuwiadiUniversity of Brawijaya1
Agus NurrofikUniversity of Brawijaya1
Muhammad FathoniUniversity of Brawijaya1
Nia KurniawanUniversity of Brawijaya1
Miftah Farid AssiddiqyUniversity of Brawijaya1
Abdul Mutholib ShahroniUniversity of Brawijaya1
Catur RetnaningdyahUniversity of Brawijaya1
Dian AliviyantiUniversity of Brawijaya1
Fitriana RahmawatiUniversity of Brawijaya1

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Sumber metadata: OAI-PMH (metadata jurnal) http://jtrolis.ub.ac.id/index.php/jtrolis/oai, pertama di-harvest 9 Nov 2026, terakhir terlihat 9 Nov 2026.
Metadata asli (oai_dc) 
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	<dc:title xml:lang="en">Genomic and Haplotype Comparison of Butanol Producing Bacteria Based on 16S rDNA</dc:title>
	<dc:creator xml:lang="en">Wiratno, Ekwan Nofa</dc:creator>
	<dc:creator xml:lang="en">Suharjono, Suharjono</dc:creator>
	<dc:creator xml:lang="en">Wardani, Agustin Krisna</dc:creator>
	<dc:description xml:lang="en">High butanol demand for transportation was support to butanol development. Exploration of butanol producing bacteria using genome comparison and biogeography give role to butanol industrialization. Objective of this research are butanol production, genome comparison and haplotype analysis of butanol producing bacteria from Ranu Pani Lake sediment using 16S rDNA sequences. Highest butanol concentrations were resulted by Paenibacillus polymyxaRP 2.2 isolate (10.34 ± 0.00 g.l-1) then Bacillusmethylotrophicus RP 3.2 and Bacillusmethylotrophicus RP 7.2 isolate (10.11 ± 0.01 g.l-1 and 9.63 ± 0.01 g.l-1). Number of bases (T, C, A, G) of group 1 are similar, but different with group 2. Least G+C content is Clostridium saccharobutylicum Ox29 (51.35%) and highest is Bacillus methylotrophicus RP 7.2. Conserve region (1044 bp) of 16S rDNA higher then variative region (367 bp). The number of 319 bp is PIS whereas single tone as much as 48 bp. There are 17 conserves sequences. All of butanol producing bacterial sequences was clustered to 8 haplotype. Based on source of bacteria, there are three group of haplotype. Group A was isolated from Asia, group B was isolated from America and group C was isolated from Europe.</dc:description>
	<dc:publisher xml:lang="en">Journal of Tropical Life Science</dc:publisher>
	<dc:date>2016-03-04</dc:date>
	<dc:type>info:eu-repo/semantics/article</dc:type>
	<dc:type>info:eu-repo/semantics/publishedVersion</dc:type>
	<dc:format>application/pdf</dc:format>
	<dc:identifier>https://jtrolis.ub.ac.id/index.php/jtrolis/article/view/315</dc:identifier>
	<dc:identifier>10.11594/jtls.06.01.01</dc:identifier>
	<dc:source xml:lang="en">Journal of Tropical Life Science; Vol. 6 No. 1 (2016); 1-6</dc:source>
	<dc:source>2527-4376</dc:source>
	<dc:source>2087-5517</dc:source>
	<dc:source>10.11594/jtls.6.1</dc:source>
	<dc:language>eng</dc:language>
	<dc:relation>https://jtrolis.ub.ac.id/index.php/jtrolis/article/view/315/pdf</dc:relation>
	<dc:rights xml:lang="en">Copyright (c) 2016 Journal of Tropical Life Science</dc:rights>
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