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Genetic diversity of Lombok chickens based on D-loop mitochondrial DNA sequences

Jurnal Ilmu Ternak dan Veteriner · Vol. 13 No. 4 (2012)

DOI
10.14334/jitv.v13i4.575
ISSN
2252-696X, 0853-7380
Terbit
2012-02-05
Penerbit
APPERTANI
Bahasa
eng
Lisensi
creativecommons.org/licenses/by/4.0

Abstrak

Mitochondrial DNA (mtDNA) displacement (D)-loop sequences were used to study the genetic diversity and relationship of Lombok chickens. A total of 45 individuals were sampled. The D-loop segment was PCR amplified and subsequently sequenced. The sequences of the 785 nucleotides were used for analysis. Twelve haplotypes were identified from 25 polymorphic sites with polymorphism between nucleotides 200 and 400 contributing to 80% of the variation. Fu’s Fs value was - 8.768 (all samples, P = 0), indicating high genetic diversity and population expansion, a conclusion supported by a neighbor– joining analysis of the haplotypes. Nucleotides diversity of the Lombok chicken were 0.00221 and haplotype diversity were 0.654 + 0.08. The dominant haplotype found among the Lombok chickens was haplotype B (62%) and genetic distances value ranged from 0.001 to 0.017.   Key Words: Mtdna, D-Loop, Genetic Diversity, Haplotype, Lombok Chicken

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  • Indonesian Institute of Sciences
  • National Research and Innovation Agency
  • IPB University
  • London School of Hygiene & Tropical Medicine
  • Universitas Djuanda
  • Natural History Museum
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  • Organisasi sama
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Rekan penulisOrganisasiArtikel bersama
Tike SartikaNational Research and Innovation Agency3
MOCH SYAMSUL ARIFIN ZEINIndonesian Institute of Sciences2
Sri Hendrastuti HidayatIPB University1
RUSMILAH SUSENOAfiliasi tidak diketahui1
JUMANTO HARJOSUDARMOAfiliasi tidak diketahui1
SOEMARTONO SOSROMARSONOAfiliasi tidak diketahui1
MOCH SAMSUL ARIFIN ZEINIndonesian Institute of Sciences1
Amir HamidyIndonesian Institute of Sciences1
Evy Ayu AridaIndonesian Institute of Sciences1
S SulandariAfiliasi tidak diketahui1
SubandriyoUniversitas Djuanda1
. MuladnoAfiliasi tidak diketahui1
S. SubandriyoLondon School of Hygiene & Tropical Medicine1
RiwantoroNatural History Museum1

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Sumber metadata: OAI-PMH (metadata jurnal) https://medpub.appertani.org/index.php/jitv/oai, pertama di-harvest 9 Nov 2026, terakhir terlihat 9 Nov 2026.
Metadata asli (oai_dc) 
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	<dc:title xml:lang="en-US">Genetic diversity of Lombok chickens based on D-loop mitochondrial DNA sequences</dc:title>
	<dc:creator>Arifin Zein, M. Syamsul</dc:creator>
	<dc:creator>Sulandari, Sri</dc:creator>
	<dc:description xml:lang="en-US">Mitochondrial DNA (mtDNA) displacement (D)-loop sequences were used to study the genetic diversity and relationship of Lombok chickens. A total of 45 individuals were sampled. The D-loop segment was PCR amplified and subsequently sequenced. The sequences of the 785 nucleotides were used for analysis. Twelve haplotypes were identified from 25 polymorphic sites with polymorphism between nucleotides 200 and 400 contributing to 80% of the variation. Fu’s Fs value was - 8.768 (all samples, P = 0), indicating high genetic diversity and population expansion, a conclusion supported by a neighbor– joining analysis of the haplotypes. Nucleotides diversity of the Lombok chicken were 0.00221 and haplotype diversity were 0.654 + 0.08. The dominant haplotype found among the Lombok chickens was haplotype B (62%) and genetic distances value ranged from 0.001 to 0.017.     Key Words: Mtdna, D-Loop, Genetic Diversity, Haplotype, Lombok Chicken</dc:description>
	<dc:publisher xml:lang="en-US">APPERTANI</dc:publisher>
	<dc:date>2012-02-05</dc:date>
	<dc:type>info:eu-repo/semantics/article</dc:type>
	<dc:type>info:eu-repo/semantics/publishedVersion</dc:type>
	<dc:type xml:lang="en-US">Peer-reviewed Article</dc:type>
	<dc:format>application/pdf</dc:format>
	<dc:identifier>https://medpub.appertani.org/index.php/jitv/article/view/575</dc:identifier>
	<dc:identifier>10.14334/jitv.v13i4.575</dc:identifier>
	<dc:source xml:lang="en-US">Jurnal Ilmu Ternak dan Veteriner; Vol 13, No 4 (2008): DECEMBER 2008; p.308-314</dc:source>
	<dc:source>2252-696X</dc:source>
	<dc:source>0853-7380</dc:source>
	<dc:language>eng</dc:language>
	<dc:relation>https://medpub.appertani.org/index.php/jitv/article/view/575/584</dc:relation>
	<dc:rights xml:lang="en-US">Copyright (c) 1970 Indonesian Journal of Animal and Veterinary Sciences</dc:rights>
	<dc:rights xml:lang="en-US">http://creativecommons.org/licenses/by/4.0</dc:rights>
</oai_dc:dc>