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Molecular Docking Analysis of Hydroxy Chalcones and Flavones from Anisaldehyde and Veratraldehyde as EGFR Inhibitors: Predicting Anticancer Potential

Molekul: Jurnal Ilmiah Kimia · Vol. 19 No. 1 (2024) · hlm. 76–85

DOI
10.20884/1.jm.2024.19.1.8956
ISSN
2503-0310, 1907-9761
Terbit
2024-03-14
Penerbit
Universitas Jenderal Soedirman
Bahasa
eng

Abstrak

This study aimed to investigate the potential of hydroxy chalcone and flavone derivatives as inhibitors of the epidermal growth factor receptor (EGFR) with anticancer properties. Molecular docking simulations were conducted using Autodock Tools 1.5.6 and Discovery Studio visualizer. The EGFR protein structure with the PDB code 1M17 was utilized as the receptor, explicitly targeting the binding pocket. Redocking of the reference ligand erlotinib yielded a binding energy of -7.51 kcal mol-1 with an RMSD of 0.54 Å, confirming the accuracy of the docking protocol. The hydroxy chalcone and flavone derivatives exhibited binding energies ranging from -6.50 to -7.67 kcal mol-1 when interacting with the EGFR protein. Among the studied compounds, compound 2',5'-dihydroxy-3,4-dimethoxychalcone (1g) displayed the lowest binding energy. Interactions involving amino acids such as Met769, Ala719, Thr766, Lys721, and Glu738 were identified as crucial hydrogen bonding interactions between the ligands and the EGFR protein. These findings suggest that 2',5'-dihydroxy-3,4-dimethoxychalcone holds strong potential as a tyrosine kinase inhibitor, positioning it as a promising candidate for further development as an anticancer agent. The outcomes of the computational analysis conducted through the pkCSM online platform indicated that the chemical 2',5'-dihydroxy-3,4-dimethoxychalcone had favorable pharmacokinetic characteristics and showed low toxicity levels. Keywords: molecular docking, hydroxy chalcone, flavone, egfr, ADMET

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  • Universitas Gadjah Mada
  • Universitas Ahmad Dahlan
  • Politeknik ATK Yogyakarta
  • Universitas Jember
  • University of Mataram
  • National Research and Innovation Agency
  • Sunan Kalijaga State Islamic University Yogyakarta
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Rekan penulisOrganisasiArtikel bersama
Iqna YudiyantiUniversitas Ahmad Dahlan1
Tutik Dwi WahyuningsihUniversitas Gadjah Mada1
Estin NofiyantiAfiliasi tidak diketahui1
Noer Laelly BtagAfiliasi tidak diketahui1
Novi NurjanahAfiliasi tidak diketahui1
Nurcholis SalmanAfiliasi tidak diketahui1
Yoga PriastomoUniversitas Gadjah Mada1
Dwi SiswantaUniversitas Gadjah Mada1
Busroni BusroniUniversitas Jember1
Sri Juari SantosaUniversitas Gadjah Mada1
Jumina JuminaUniversitas Gadjah Mada1
Yehezkiel Steven KurniawanUniversitas Gadjah Mada1
Jumina JuminaUniversitas Gadjah Mada1
Putri Dian AnggraeniUniversitas Gadjah Mada1
Agus Dwi AnantoUniversity of Mataram1
Harno Dwi PranowoUniversitas Gadjah Mada1
Niko PrasetyoUniversitas Gadjah Mada1
Tri Muji SusantoroNational Research and Innovation Agency1
Rofy Anugrah DesrinaAfiliasi tidak diketahui1
Triyono TriyonoUniversitas Gadjah Mada1
Sudarlin SudarlinSunan Kalijaga State Islamic University Yogyakarta1

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Sumber metadata: OAI-PMH (metadata jurnal) https://jos.unsoed.ac.id/index.php/jm/oai, pertama di-harvest 9 Nov 2026, terakhir terlihat 9 Nov 2026.
Metadata asli (oai_dc)
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	<dc:title xml:lang="en-US"> Molecular Docking Analysis of Hydroxy Chalcones and Flavones from Anisaldehyde and Veratraldehyde as EGFR Inhibitors: Predicting Anticancer Potential</dc:title>
	<dc:creator>Pambudi, Wisnu</dc:creator>
	<dc:creator>Haryadi, Winarto</dc:creator>
	<dc:creator>Matsjeh, Sabirin</dc:creator>
	<dc:creator>Anwar, Chairil</dc:creator>
	<dc:description xml:lang="en-US">This study aimed to investigate the potential of hydroxy chalcone and flavone derivatives as inhibitors of the epidermal growth factor receptor (EGFR) with anticancer properties. Molecular docking simulations were conducted using Autodock Tools 1.5.6 and Discovery Studio visualizer. The EGFR protein structure with the PDB code 1M17 was utilized as the receptor, explicitly targeting the binding pocket. Redocking of the reference ligand erlotinib yielded a binding energy of -7.51 kcal mol-1 with an RMSD of 0.54 Å, confirming the accuracy of the docking protocol. The hydroxy chalcone and flavone derivatives exhibited binding energies ranging from -6.50 to -7.67 kcal mol-1 when interacting with the EGFR protein. Among the studied compounds, compound 2',5'-dihydroxy-3,4-dimethoxychalcone (1g) displayed the lowest binding energy. Interactions involving amino acids such as Met769, Ala719, Thr766, Lys721, and Glu738 were identified as crucial hydrogen bonding interactions between the ligands and the EGFR protein. These findings suggest that 2',5'-dihydroxy-3,4-dimethoxychalcone holds strong potential as a tyrosine kinase inhibitor, positioning it as a promising candidate for further development as an anticancer agent. The outcomes of the computational analysis conducted through the pkCSM online platform indicated that the chemical 2',5'-dihydroxy-3,4-dimethoxychalcone had favorable pharmacokinetic characteristics and showed low toxicity levels.
&amp;nbsp;
Keywords: molecular docking, hydroxy chalcone, flavone, egfr, ADMET</dc:description>
	<dc:publisher xml:lang="en-US">Universitas Jenderal Soedirman</dc:publisher>
	<dc:date>2024-03-14</dc:date>
	<dc:type>info:eu-repo/semantics/article</dc:type>
	<dc:type>info:eu-repo/semantics/publishedVersion</dc:type>
	<dc:format>application/pdf</dc:format>
	<dc:identifier>https://jos.unsoed.ac.id/index.php/jm/article/view/8956</dc:identifier>
	<dc:identifier>10.20884/1.jm.2024.19.1.8956</dc:identifier>
	<dc:source xml:lang="en-US">Molekul; Vol 19 No 1 (2024); 76-85</dc:source>
	<dc:source>2503-0310</dc:source>
	<dc:source>1907-9761</dc:source>
	<dc:language>eng</dc:language>
	<dc:relation>https://jos.unsoed.ac.id/index.php/jm/article/view/8956/5108</dc:relation>
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