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Haplotype Diversity of Partial Cytochrome b Gene in Kebumen Ongole Grade Cattle

Tropical Animal Science Journal · Vol. 41 No. 1 (2018) · hlm. 8–14

DOI
10.5398/tasj.2018.41.1.8
ISSN
2615-790X, 2615-787X
Terbit
2018-04-06
Penerbit
Faculty of Animal Science, IPB University
Bahasa
eng

Abstrak

Cytochrome b gene is commonly used to figure out the genetic variation in animals. This research was designed to explore specific markers of Kebumen Ongole grade cattle and to understand the relationship between Kebumen and Brahman cattle using mtDNA cyt b sequences. The sequence of mtDNA cytochrome b gene of 14 individuals Kebumen Ongole grade cattle and 15 individuals Brahman cattle was determined by using polymerase chain reaction and sequencing with a pair of primer. The haploview software was utilized to linkage disequilibrium (LD) analysis. As a result, 36 SNPs (single nucleotide polymorphisms) with 8 haplotypes were identified in Kebumen Ongole grade cattle. In contrast, a small number of SNPs (7) and haplotypes (6) were observed in Brahman cattle. The homozigosity in Brahman cattle was higher than that in Kebumen Ongole grade cattle cattle. Moreover, based on mtDNA sequences, 50% of Kebumen Ongole grade cattle had 85% similarity with Brahman cattle. The SNP number and LD values of Kebumen Ongole grade cattle were greater than those of Brahman cattle. It was presumed that Brahman cattle might be introduced into Kebumen territory. In conclusion, some of Kebumen Ongole grade cattle have genetic relation with Brahman cattle. In addition, the information of SNP and haplotype results from this research can be used as markers to differentiate breeds of animals.

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  • Universitas Gadjah Mada
  • Padjadjaran University
  • Universitas Winaya Mukti
  • Indonesian Institute of Sciences
  • IPB University
  • Politeknik Pertanian Negeri Kupang
  • Sebelas Maret University
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Rekan penulisOrganisasiArtikel bersama
KustantinahAfiliasi tidak diketahui2
Sigit BintaraUniversitas Gadjah Mada2
Resti Yuliana RahmawatiUniversitas Gadjah Mada2
Heru SasongkoUniversitas Gadjah Mada2
Budi GuntoroUniversitas Gadjah Mada2
Ayu RahayuUniversitas Gadjah Mada2
Wihandoyo WihandoyoUniversitas Gadjah Mada2
Bambang AriyadiUniversitas Gadjah Mada2
Sarah Sakinah UmadiPadjadjaran University1
Denny SobardiniPadjadjaran University1
Zakia UlfahUniversitas Gadjah Mada1
Heru SasongkoUniversitas Gadjah Mada1
Dodi SukmayanaUniversitas Winaya Mukti1
Kovertina Rakhmi IndrianaPadjadjaran University1
Cucu SuhermanPadjadjaran University1
Santi RosniawatyPadjadjaran University1
Widodo WidodoIPB University1
Slamet Diah VolkandariIndonesian Institute of Sciences1
S. SumadiUniversitas Gadjah Mada1
WitjaksonoAfiliasi tidak diketahui1
Jacqualine Arriani BungaPoliteknik Pertanian Negeri Kupang1
Franciskus Xaverius WagimanUniversitas Gadjah Mada1
Budi Setiadi DaryonoUniversitas Gadjah Mada1
Hendry T.S.S.G. SaragihUniversitas Gadjah Mada1
Utin Elsya PuspitaUniversitas Gadjah Mada1
Yoga Cipta PerdanaUniversitas Gadjah Mada1
Richi Yuliavian KusminantoSebelas Maret University1
Fuad Al HazimiUniversitas Gadjah Mada1
Vani Putri Andra CeriAfiliasi tidak diketahui1
Panjono PanjonoUniversitas Gadjah Mada1
SubandriyoUniversitas Djuanda1
Sumadi .Universitas Gadjah Mada1
. HartatiAfiliasi tidak diketahui1
Fatimah Az Zahra ChairunissaUniversitas Gadjah Mada1
F. J. FadillahUniversitas Gadjah Mada1

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Sumber metadata: OAI-PMH (metadata jurnal) https://journal.ipb.ac.id/index.php/tasj/oai, pertama di-harvest 10 Nov 2026, terakhir terlihat 10 Nov 2026.
Metadata asli (oai_dc) 
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	<dc:title xml:lang="en">Haplotype Diversity of Partial Cytochrome b Gene in  Kebumen Ongole Grade Cattle</dc:title>
	<dc:creator xml:lang="en">Hartatik, T.</dc:creator>
	<dc:creator xml:lang="en">Maharani, D.</dc:creator>
	<dc:creator xml:lang="en">Sidadolog, J. H. P.</dc:creator>
	<dc:creator xml:lang="en">Fathoni, A.</dc:creator>
	<dc:creator xml:lang="en">Sumadi, Sumadi</dc:creator>
	<dc:subject xml:lang="en">haplotype</dc:subject>
	<dc:subject xml:lang="en">cyt b gene</dc:subject>
	<dc:subject xml:lang="en">kebumen ongole grade cattle</dc:subject>
	<dc:subject xml:lang="en">linkage disequilibrium</dc:subject>
	<dc:description xml:lang="en">Cytochrome b gene is commonly used to figure out the genetic variation in animals. This research was designed to explore specific markers of Kebumen Ongole grade cattle and to understand the relationship between Kebumen and Brahman cattle using mtDNA cyt b sequences. The sequence of mtDNA cytochrome b gene of 14 individuals Kebumen Ongole grade cattle and 15 individuals  Brahman cattle was determined by using polymerase chain reaction and sequencing with a pair of primer. The haploview software was utilized to linkage disequilibrium (LD) analysis. As a result, 36 SNPs (single nucleotide polymorphisms) with 8 haplotypes were identified in Kebumen Ongole grade cattle. In contrast, a small number of SNPs (7) and haplotypes (6) were observed in Brahman cattle. The homozigosity in Brahman cattle was  higher than that in Kebumen Ongole grade cattle cattle. Moreover, based on mtDNA sequences, 50% of Kebumen Ongole grade cattle had 85% similarity with Brahman cattle. The SNP number and LD values of Kebumen Ongole grade cattle were greater than those of Brahman cattle. It was presumed that Brahman cattle might be introduced into Kebumen territory. In conclusion, some of Kebumen Ongole grade cattle have genetic relation with Brahman cattle. In addition, the information of SNP and haplotype results from this research can be used as markers to differentiate breeds of animals.</dc:description>
	<dc:publisher xml:lang="en">Faculty of Animal Science, IPB University</dc:publisher>
	<dc:date>2018-04-06</dc:date>
	<dc:type>info:eu-repo/semantics/article</dc:type>
	<dc:type>info:eu-repo/semantics/publishedVersion</dc:type>
	<dc:format>application/pdf</dc:format>
	<dc:identifier>https://journal.ipb.ac.id/tasj/article/view/20945</dc:identifier>
	<dc:identifier>10.5398/tasj.2018.41.1.8</dc:identifier>
	<dc:source xml:lang="en">Tropical Animal Science Journal; Vol. 41 No. 1 (2018): Tropical Animal Science Journal; 8-14</dc:source>
	<dc:source>2615-790X</dc:source>
	<dc:source>2615-787X</dc:source>
	<dc:language>eng</dc:language>
	<dc:relation>https://journal.ipb.ac.id/tasj/article/view/20945/14337</dc:relation>
	<dc:rights xml:lang="en">Copyright (c) 2018 Tropical Animal Science Journal</dc:rights>
</oai_dc:dc>