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Genetic Diversity of Pacific Seabream, Acanthopagrus pacificus in South-Coast Java, Indonesia

Biosaintifika: Journal of Biology & Biology Education · Vol. 16 No. 2 (2024) · hlm. 224–231

DOI
10.15294/biosaintifika.v16i2.3627
ISSN
2338-7610, 2085-191X
Terbit
2024-08-15
Penerbit
Universitas Negeri Semarang
Bahasa
eng

Abstrak

Pacific Seabream, Acanthopagrus pacificus, is a popular marine fish from the Sparidae family. This species is an economically essential fisheries commodity in the south-coast Java, Indonesia. However, limited studies are available on A. pacificus in Indonesia. Only two studies reported the presence of A. pacificus in South-Coast Java. No study has been carried out on the biology of A. pacificus from south-coast Java. Therefore, biological studies of A. pacificus are needed, including genetic diversity studies. This study aimed to evaluate the genetic diversity of A. pacificus in South-Coast Java using the cytochrome c oxidase gene. Fish samples were bought from Bantul Fishing Harbor, Yogyakarta, Panganadaran Fishing Port, Bojongsalawe Fish Auction Center, West Java, and Binuangeun Fishing Harbor in Lebak Regency, Banten. The genetic marker was processed in PT. Genetika Science Indonesia follows the company procedure. Haplotype and nucleotide diversity were calculated mathematically using Arlequin software. The result showed that polymorphic loci were only 1.3%, indicating low polymorphisms. A. pacificus showed haplotype and nucleotide diversities of 0.511±0.110 and 0.15%±0.12%, respectively. Those values indicated low genetic diversity. This study concluded that the A. pacificus population in South-Coast Java showed low genetic diversity. This study provides the first data about the genetic diversity of A. pacificus in South-Coast Java, which is essential data for fisheries management.

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  • Jenderal Soedirman University
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  • University of Bahri
  • University of Bremen
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Rekan penulisOrganisasiArtikel bersama
Hanan Hassan Alsheikh MahmoudUniversity of Bahri8
Aswi Andriasari RofiqohJenderal Soedirman University5
Anastasia Endang PulungsariJenderal Soedirman University3
Dedi SoedharmaIPB University2
Dietmar H. BlohmUniversity of Bremen2
SukirnoAfiliasi tidak diketahui2
Silma Safira IhyaJenderal Soedirman University2
Romanus Edy PrabowoJenderal Soedirman University2
Kusbiyanto KusbiyantoJenderal Soedirman University2
Muh. Nadjmi AbuliasAfiliasi tidak diketahui2
Indarmawan IndarmawanAfiliasi tidak diketahui2
Fabian Rizky FathurahmanJenderal Soedirman University1
Ali SumanNational Research and Innovation Agency1
Siti RukayahJenderal Soedirman University1
Windiarini LestariJenderal Soedirman University1
Maria Bramasti SusiloJenderal Soedirman University1
Adi AmurwantoJenderal Soedirman University1
Dedi NuryadiIPB University1
Agus Hery SusantoJenderal Soedirman University1
Dedy DuryadiIPB University1
Fajar Nur SulistyahadiJenderal Soedirman University1
I Gusti Agung Ayu Ratna PuspitasariJenderal Soedirman University1
Atang AtangJenderal Soedirman University1
Priyo SusatyoJenderal Soedirman University1
Nuning SetyaningrumJenderal Soedirman University1
Titi ChasanahJenderal Soedirman University1
Sorta Basar Ida SimanjuntakJenderal Soedirman University1
Gratiana Ekaningsih WijayantiJenderal Soedirman University1
Maditaningtyas Hawwa ZuwandaJenderal Soedirman University1
Norman Arie PrayogoJenderal Soedirman University1
Purnama SukardiJenderal Soedirman University1
Endang HilmiJenderal Soedirman University1
Rita Eka RositaJenderal Soedirman University1
Hamdan SyakuriJenderal Soedirman University1

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Sumber metadata: OAI-PMH (metadata jurnal) https://journal.unnes.ac.id/journals/biosaintifika/oai, pertama di-harvest 5 Nov 2026, terakhir terlihat 8 Nov 2026.
Metadata asli (oai_dc) 
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	<dc:title xml:lang="en">Genetic Diversity of Pacific Seabream, Acanthopagrus pacificus in South-Coast Java, Indonesia</dc:title>
	<dc:creator xml:lang="en">Nuryanto, Agus</dc:creator>
	<dc:creator xml:lang="en">Bhagawati, Dian </dc:creator>
	<dc:creator xml:lang="en">Tuti Winarni, Elly </dc:creator>
	<dc:creator xml:lang="en">Wibowo, Dwi Nugroho </dc:creator>
	<dc:creator xml:lang="en">Abdalla Mohammed, Mohammed </dc:creator>
	<dc:subject xml:lang="en">Diversity</dc:subject>
	<dc:subject xml:lang="en">haplotype</dc:subject>
	<dc:subject xml:lang="en">nucleotide</dc:subject>
	<dc:subject xml:lang="en">polymorphism</dc:subject>
	<dc:subject xml:lang="en">seabream</dc:subject>
	<dc:description xml:lang="en">Pacific Seabream, Acanthopagrus pacificus, is a popular marine fish from the Sparidae family. This species is an economically essential fisheries commodity in the south-coast Java, Indonesia. However, limited studies are available on A. pacificus in Indonesia. Only two studies reported the presence of A. pacificus in South-Coast Java. No study has been carried out on the biology of A. pacificus from south-coast Java. Therefore, biological studies of A. pacificus are needed, including genetic diversity studies. This study aimed to evaluate the genetic diversity of A. pacificus in South-Coast Java using the cytochrome c oxidase gene. Fish samples were bought from Bantul Fishing Harbor, Yogyakarta, Panganadaran Fishing Port, Bojongsalawe Fish Auction Center, West Java, and Binuangeun Fishing Harbor in Lebak Regency, Banten. The genetic marker was processed in PT. Genetika Science Indonesia follows the company procedure. Haplotype and nucleotide diversity were calculated mathematically using Arlequin software. The result showed that polymorphic loci were only 1.3%, indicating low polymorphisms. A. pacificus showed haplotype and nucleotide diversities of 0.511±0.110 and 0.15%±0.12%, respectively. Those values indicated low genetic diversity. This study concluded that the A. pacificus population in South-Coast Java showed low genetic diversity. This study provides the first data about the genetic diversity of A. pacificus in South-Coast Java, which is essential data for fisheries management.</dc:description>
	<dc:publisher xml:lang="en">Universitas Negeri Semarang</dc:publisher>
	<dc:date>2024-08-15</dc:date>
	<dc:type>info:eu-repo/semantics/article</dc:type>
	<dc:type>info:eu-repo/semantics/publishedVersion</dc:type>
	<dc:type xml:lang="en">Peer-reviewed Article</dc:type>
	<dc:format>application/pdf</dc:format>
	<dc:identifier>https://journal.unnes.ac.id/journals/biosaintifika/article/view/3627</dc:identifier>
	<dc:identifier>10.15294/biosaintifika.v16i2.3627</dc:identifier>
	<dc:source xml:lang="en">Biosaintifika: Journal of Biology &amp; Biology Education; Vol. 16 No. 2 (2024): August 2024; 224-231</dc:source>
	<dc:source>2338-7610</dc:source>
	<dc:source>2085-191X</dc:source>
	<dc:source>10.15294/biosaintifika.v16i2</dc:source>
	<dc:language>eng</dc:language>
	<dc:relation>https://journal.unnes.ac.id/journals/biosaintifika/article/view/3627/1155</dc:relation>
	<dc:rights xml:lang="en">Copyright (c) 2024 Biosaintifika: Journal of Biology &amp; Biology Education</dc:rights>
</oai_dc:dc>