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Decoding brain tumor insights: Evaluating CAM variants with 3D U-Net for segmentation

Communications in Science and Technology · Vol. 9 No. 2 (2024) · pp. 262–273

DOI
10.21924/cst.9.2.2024.1477
ISSN
2502-9266, 2502-9258
Published
2024-12-31
Publisher
Komunitas Ilmuwan dan Profesional Muslim Indonesia
Language
eng

Abstract

Brain tumor segmentation is critical for effective diagnosis and treatment planning. While, conventional manual segmentation techniques are seen inefficient and variable, highlighting the need for automated methods. This study enhances medical image analysis, particularly in brain tumor segmentation by improving the explainability and accuracy of deep learning models, which are essential for clinical trust. Using the 3D U-Net architecture with the BraTS 2020 dataset, the study achieved precise localization and detailed segmentation with the mean recall values of 0.8939 for Whole Tumor (WT), 0.7941 for Enhancing Tumor (ET), and 0.7846 for Tumor Core (TC). The Dice coefficients were 0.9065 for WT, 0.8180 for TC, and 0.7715 for ET. By integrating explainable AI techniques, such as Class Activation Mapping (CAM) and its variants (Grad-CAM, Grad-CAM++, and Score-CAM), the study ensures high segmentation accuracy and transparency. Grad-CAM, in this case, provided the most reliable and detailed visual explanations, significantly enhancing model interpretability for clinical applications. This approach not only enhances the accuracy of brain tumor segmentation but also builds clinical trust by making model decisions more transparent and understandable. Finally, the combination of 3D U-Net and XAI techniques supports more effective diagnosis, treatment planning, and patient care in brain tumor management.

Keywords

Collaboration network of the authors

22 authors · 51 co-authorship links

Hover or tap a name to highlight its co-authors. Double-click to open the author's page.

  • Universitas Gadjah Mada
  • Affiliation unknown
  • Different organisations
  • Same organisation
  • Affiliation unknown
  • Thicker line = more joint articles · bigger circle = more articles
Show as table
Co-authorOrganisationJoint articles
Teguh Bharata AdjiUniversitas Gadjah Mada2
Oyas WahyunggoroUniversitas Gadjah Mada2
Adha Imam CahyadiUniversitas Gadjah Mada2
Hendri Himawan TriharmintoUniversitas Gadjah Mada2
Hanung Adi NugrohoUniversitas Gadjah Mada2
Widhia KZ OktoeberzaAffiliation unknown2
Vesi YulyantiAffiliation unknown2
Chandra Ramadhan Atmaja PerdanaAffiliation unknown2
Indah SoesantiUniversitas Gadjah Mada2
Aqil AqthobirrobbanyAffiliation unknown2
Yenny RahmawatiAffiliation unknown2
Kuntpong WoraratpanyaAffiliation unknown2
Tri LestariAffiliation unknown1
Rezty Amalia ArasAffiliation unknown1
Thea KiranaAffiliation unknown1
Vicko PranowoAffiliation unknown1
Augustine Herini Tita HutamiAffiliation unknown1
Aulia ArhamAffiliation unknown1
Etik IrijantiAffiliation unknown1

Affiliations come from OpenAlex; journal OAI-PMH metadata carries none. Authors without an OpenAlex ID are matched by name, which can merge or split people.

Metadata source: OAI-PMH (metadata jurnal) https://cst.kipmi.or.id/oai, first harvested 8 Nov 2026, last seen 8 Nov 2026.
Original metadata (oai_dc)
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	<dc:title xml:lang="en-US">Decoding brain tumor insights: Evaluating CAM variants with 3D U-Net for segmentation</dc:title>
	<dc:creator>Hardani, Dian Nova Kusuma</dc:creator>
	<dc:creator>Ardiyanto, Igi</dc:creator>
	<dc:creator>Adi Nugroho, Hanung</dc:creator>
	<dc:subject xml:lang="en-US">brain tumor segmentation</dc:subject>
	<dc:subject xml:lang="en-US">3D U-Net</dc:subject>
	<dc:subject xml:lang="en-US">explainable AI</dc:subject>
	<dc:subject xml:lang="en-US">class activation mapping</dc:subject>
	<dc:subject xml:lang="en-US">deep learning</dc:subject>
	<dc:subject xml:lang="en-US">medical imaging</dc:subject>
	<dc:description xml:lang="en-US">Brain tumor segmentation is critical for effective diagnosis and treatment planning. While, conventional manual segmentation techniques are seen inefficient and variable, highlighting the need for automated methods. This study enhances medical image analysis, particularly in brain tumor segmentation by improving the explainability and accuracy of deep learning models, which are essential for clinical trust. Using the 3D U-Net architecture with the BraTS 2020 dataset, the study achieved precise localization and detailed segmentation with the mean recall values of 0.8939 for Whole Tumor (WT), 0.7941 for Enhancing Tumor (ET), and 0.7846 for Tumor Core (TC). The Dice coefficients were 0.9065 for WT, 0.8180 for TC, and 0.7715 for ET. By integrating explainable AI techniques, such as Class Activation Mapping (CAM) and its variants (Grad-CAM, Grad-CAM++, and Score-CAM), the study ensures high segmentation accuracy and transparency. Grad-CAM, in this case, provided the most reliable and detailed visual explanations, significantly enhancing model interpretability for clinical applications. This approach not only enhances the accuracy of brain tumor segmentation but also builds clinical trust by making model decisions more transparent and understandable. Finally, the combination of 3D U-Net and XAI techniques supports more effective diagnosis, treatment planning, and patient care in brain tumor management.</dc:description>
	<dc:publisher xml:lang="en-US">Komunitas Ilmuwan dan Profesional Muslim Indonesia</dc:publisher>
	<dc:date>2024-12-31</dc:date>
	<dc:type>info:eu-repo/semantics/article</dc:type>
	<dc:type>info:eu-repo/semantics/publishedVersion</dc:type>
	<dc:format>application/pdf</dc:format>
	<dc:identifier>https://cst.kipmi.or.id/journal/article/view/1477</dc:identifier>
	<dc:identifier>10.21924/cst.9.2.2024.1477</dc:identifier>
	<dc:source xml:lang="en-US">Communications in Science and Technology; Vol. 9 No. 2 (2024); 262-273</dc:source>
	<dc:source xml:lang="id-ID">Communications in Science and Technology; Vol 9 No 2 (2024); 262-273</dc:source>
	<dc:source>2502-9266</dc:source>
	<dc:source>2502-9258</dc:source>
	<dc:source>10.21924/cst.9.2.2024</dc:source>
	<dc:language>eng</dc:language>
	<dc:relation>https://cst.kipmi.or.id/journal/article/view/1477/178</dc:relation>
	<dc:rights xml:lang="en-US">Copyright (c) 2024 Communications in Science and Technology</dc:rights>
</oai_dc:dc>