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Genomic and Haplotype Comparison of Butanol Producing Bacteria Based on 16S rDNA

Journal of Tropical Life Science : International Journal of Theoretical, Experimental, and Applied Life Sciences · Vol. 6 No. 1 (2016) · pp. 1–6

DOI
10.11594/jtls.06.01.01
ISSN
2527-4376, 2087-5517
Published
2016-03-04
Publisher
Journal of Tropical Life Science
Language
eng

Abstract

High butanol demand for transportation was support to butanol development. Exploration of butanol producing bacteria using genome comparison and biogeography give role to butanol industrialization. Objective of this research are butanol production, genome comparison and haplotype analysis of butanol producing bacteria from Ranu Pani Lake sediment using 16S rDNA sequences. Highest butanol concentrations were resulted by Paenibacillus polymyxaRP 2.2 isolate (10.34 ± 0.00 g.l-1) then Bacillusmethylotrophicus RP 3.2 and Bacillusmethylotrophicus RP 7.2 isolate (10.11 ± 0.01 g.l-1 and 9.63 ± 0.01 g.l-1). Number of bases (T, C, A, G) of group 1 are similar, but different with group 2. Least G+C content is Clostridium saccharobutylicum Ox29 (51.35%) and highest is Bacillus methylotrophicus RP 7.2. Conserve region (1044 bp) of 16S rDNA higher then variative region (367 bp). The number of 319 bp is PIS whereas single tone as much as 48 bp. There are 17 conserves sequences. All of butanol producing bacterial sequences was clustered to 8 haplotype. Based on source of bacteria, there are three group of haplotype. Group A was isolated from Asia, group B was isolated from America and group C was isolated from Europe.

Collaboration network of the authors

40 authors · 106 co-authorship links · showing the 40 most connected

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  • Institut Teknologi Sepuluh Nopember
  • Lampung University
  • University of Brawijaya
  • Affiliation unknown
  • Different organisations
  • Same organisation
  • Affiliation unknown
  • Thicker line = more joint articles · bigger circle = more articles
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Co-authorOrganisationJoint articles
IS HELIANTIAffiliation unknown2
Catur RetnaningdyahAffiliation unknown2
Irfan MustafaAffiliation unknown1
Evi OctavianyAffiliation unknown1
Maria UlfahAffiliation unknown1
Dadang SuhendarAffiliation unknown1
Niknik NurhayatiAffiliation unknown1
Anita Kusuma FinalissariAffiliation unknown1
Ajeng Astrini BrahmantiAffiliation unknown1
Erryana MartatiAffiliation unknown1
Widya Dwi Rukmi PutriAffiliation unknown1
Rofiq SunaryantoAffiliation unknown1
Syamsika TahirAffiliation unknown1
Tri Yudani Mardining RarasAffiliation unknown1
Mauludy Jutta AjrullahAffiliation unknown1
Ellen Fenix GunawanAffiliation unknown1
Nadya Shafa PramestiAffiliation unknown1
Sumarno Reto PrawiroAffiliation unknown1
Bambang SetiawanInstitut Teknologi Sepuluh Nopember1
Fatchiyah FatchiyahAffiliation unknown1
Takeshi OhtaAffiliation unknown1
Vita AgustinaAffiliation unknown1
Aditya Maulana Perdana PutraAffiliation unknown1
Muhammad Darwin PrenggonoAffiliation unknown1
Ratih Pratiwi SariAffiliation unknown1
Mahardian RahmadiAffiliation unknown1
Bagyo YanuwiadiAffiliation unknown1
Nia KurniawanAffiliation unknown1
Agus NurrofikAffiliation unknown1
Muhammad FathoniAffiliation unknown1
Miftah Farid AssiddiqyAffiliation unknown1
Abdul Mutholib ShahroniAffiliation unknown1
Bambang IrawanLampung University1
Agoes SoegiantoAffiliation unknown1
Dian AliviyantiAffiliation unknown1
Rodiyati AzrianingsihUniversity of Brawijaya1
Nindi Nazula FajariniAffiliation unknown1

Affiliations come from OpenAlex; journal OAI-PMH metadata carries none. Authors without an OpenAlex ID are matched by name, which can merge or split people.

Metadata source: OAI-PMH (metadata jurnal) http://jtrolis.ub.ac.id/index.php/jtrolis/oai, first harvested 9 Nov 2026, last seen 9 Nov 2026.
Original metadata (oai_dc) 
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	<dc:title xml:lang="en">Genomic and Haplotype Comparison of Butanol Producing Bacteria Based on 16S rDNA</dc:title>
	<dc:creator xml:lang="en">Wiratno, Ekwan Nofa</dc:creator>
	<dc:creator xml:lang="en">Suharjono, Suharjono</dc:creator>
	<dc:creator xml:lang="en">Wardani, Agustin Krisna</dc:creator>
	<dc:description xml:lang="en">High butanol demand for transportation was support to butanol development. Exploration of butanol producing bacteria using genome comparison and biogeography give role to butanol industrialization. Objective of this research are butanol production, genome comparison and haplotype analysis of butanol producing bacteria from Ranu Pani Lake sediment using 16S rDNA sequences. Highest butanol concentrations were resulted by Paenibacillus polymyxaRP 2.2 isolate (10.34 ± 0.00 g.l-1) then Bacillusmethylotrophicus RP 3.2 and Bacillusmethylotrophicus RP 7.2 isolate (10.11 ± 0.01 g.l-1 and 9.63 ± 0.01 g.l-1). Number of bases (T, C, A, G) of group 1 are similar, but different with group 2. Least G+C content is Clostridium saccharobutylicum Ox29 (51.35%) and highest is Bacillus methylotrophicus RP 7.2. Conserve region (1044 bp) of 16S rDNA higher then variative region (367 bp). The number of 319 bp is PIS whereas single tone as much as 48 bp. There are 17 conserves sequences. All of butanol producing bacterial sequences was clustered to 8 haplotype. Based on source of bacteria, there are three group of haplotype. Group A was isolated from Asia, group B was isolated from America and group C was isolated from Europe.</dc:description>
	<dc:publisher xml:lang="en">Journal of Tropical Life Science</dc:publisher>
	<dc:date>2016-03-04</dc:date>
	<dc:type>info:eu-repo/semantics/article</dc:type>
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	<dc:identifier>https://jtrolis.ub.ac.id/index.php/jtrolis/article/view/315</dc:identifier>
	<dc:identifier>10.11594/jtls.06.01.01</dc:identifier>
	<dc:source xml:lang="en">Journal of Tropical Life Science; Vol. 6 No. 1 (2016); 1-6</dc:source>
	<dc:source>2527-4376</dc:source>
	<dc:source>2087-5517</dc:source>
	<dc:source>10.11594/jtls.6.1</dc:source>
	<dc:language>eng</dc:language>
	<dc:relation>https://jtrolis.ub.ac.id/index.php/jtrolis/article/view/315/pdf</dc:relation>
	<dc:rights xml:lang="en">Copyright (c) 2016 Journal of Tropical Life Science</dc:rights>
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