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k-Means Clustering to Enhance the Petrified Wood Composition Data Analyses and Its Interpretation

Indonesian Journal of Applied Mathematics · Vol. 3 No. 1 (2023)

DOI
10.35472/indojam.v3i1.1288
ISSN
2774-2016, 2774-2067
Published
2023-07-30
Publisher
Institut Teknologi Sumatra

Abstract

Geologically, the fossilization of wood materials into fossils requires appropriate conditions, some of which have been preserved for millions of years. In nature, the organic mass of wood must be quickly replaced by inorganic elements before it decomposes under harsh geological conditions. Anorganic oxides such as silica-oxide, are known to be the main components of most wood specimens (up to 80%). The presence of alkaline oxides such as sodium and potassium oxide seems to play a major role in the presence of dissolved silica during petrification. However, their significance in the petrification phenomenon that occurs in fossilized plant wood is not yet known. Therefore, in this study, cluster analysis was conducted to determine the relationship between the presence of silica and alkaline compounds in petrified wood fossils. The approach used was -means clustering supported by the Elbow Method, which aims to review and order a complex set of data into subsets, thus allowing interpretation. The results showed that the clustering of the fossil wood composition data was optimal at = 3. There is a fair correlation between the presence of silica and alkali oxide compounds (-0.504 to -0.387), as well as with another inorganic compounds (+0.957). The presence of sodium and potassium is strongly correlated during silicification (+0.905). Additionally, the results of data clustering made the wood fossilization process susceptible to describe, especially through data regression. The data visualization provides more facts and proper explanations of the role of alkaline oxides in wood silicification. This study furthers our understanding of wood fossilization, especially the diagenesis of wood chemical composition in geological history.

Collaboration network of the authors

30 authors · 75 co-authorship links

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  • Bandung Institute of Technology
  • Universitas Halu Oleo
  • Affiliation unknown
  • Different organisations
  • Same organisation
  • Affiliation unknown
  • Thicker line = more joint articles · bigger circle = more articles
Show as table
Co-authorOrganisationJoint articles
Fuji LestariAffiliation unknown2
Mika Alvionita SAffiliation unknown2
Ardika SatriaAffiliation unknown2
Dewi SuhikaBandung Institute of Technology1
Sri Efrinita IrwanAffiliation unknown1
Edi CahyonoUniversitas Halu Oleo1
. KartonoAffiliation unknown1
Happy Christin NataliaAffiliation unknown1
Rinaldi IkhramAffiliation unknown1
Nabila Nurita PutriAffiliation unknown1
Muhammad Ammar AlkautsarAffiliation unknown1
Sekar Anisa SelyAffiliation unknown1
Della Najunda K.SAffiliation unknown1
Rofi Ilmi FadhillahAffiliation unknown1
Alfredo Edward LazuardiAffiliation unknown1
Meysi SupmawatiAffiliation unknown1
Eli RahmawatiAffiliation unknown1
Naila Tsamrotul AulaAffiliation unknown1
Desi WulandariAffiliation unknown1
Angela Putri LarasatiAffiliation unknown1
Robecca Miranda Agustina GultomAffiliation unknown1
Setia Hot Dameria PurbaAffiliation unknown1
Suci Ayu PangestutiAffiliation unknown1

Affiliations come from OpenAlex; journal OAI-PMH metadata carries none. Authors without an OpenAlex ID are matched by name, which can merge or split people.

This record comes from Crossref (what the publisher deposited), because the journal's own OAI-PMH endpoint could not be harvested.

Metadata source: Crossref API (cadangan, berdasarkan ISSN) https://api.crossref.org/journals/2774-2016/works, first harvested 5 Nov 2026, last seen 5 Nov 2026.
Metadata as oai_dc, converted from Crossref
<oai_dc:dc xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:oai_dc="http://www.openarchives.org/OAI/2.0/oai_dc/"><dc:title>k-Means Clustering to Enhance the Petrified Wood Composition Data Analyses and Its Interpretation</dc:title><dc:creator>Muliawati, Triyana</dc:creator><dc:creator>Harbowo, Danni Gathot</dc:creator><dc:creator>Lubis, Andre Markus Fernando</dc:creator><dc:creator>Turnip, Juan Daniel</dc:creator><dc:creator>Irda, Erina Rosalia</dc:creator><dc:creator>Azahra, Adelia</dc:creator><dc:creator>Marito, Yanti</dc:creator><dc:description>&lt;jats:p&gt;Geologically, the fossilization of wood materials into fossils requires appropriate conditions, some of which have been preserved for millions of years. In nature, the organic mass of wood must be quickly replaced by inorganic elements before it decomposes under harsh geological conditions. Anorganic oxides such as silica-oxide, are known to be the main components of most wood specimens (up to 80%). The presence of alkaline oxides such as sodium and potassium oxide seems to play a major role in the presence of dissolved silica during petrification. However, their significance in the petrification phenomenon that occurs in fossilized plant wood is not yet known. Therefore, in this study, cluster analysis was conducted to determine the relationship between the presence of silica and alkaline compounds in petrified wood fossils. The approach used was -means clustering supported by the Elbow Method, which aims to review and order a complex set of data into subsets, thus allowing interpretation. The results showed that the clustering of the fossil wood composition data was optimal at  = 3. There is a fair correlation between the presence of silica and alkali oxide compounds (-0.504 to -0.387), as well as with another inorganic compounds (+0.957). The presence of sodium and potassium is strongly correlated during silicification (+0.905). Additionally, the results of data clustering made the wood fossilization process susceptible to describe, especially through data regression. The data visualization provides more facts and proper explanations of the role of alkaline oxides in wood silicification. This study furthers our understanding of wood fossilization, especially the diagenesis of wood chemical composition in geological history.&lt;/jats:p&gt;</dc:description><dc:publisher>Institut Teknologi Sumatra</dc:publisher><dc:date>2023-07-30</dc:date><dc:type>info:eu-repo/semantics/article</dc:type><dc:format>application/pdf</dc:format><dc:identifier>https://doi.org/10.35472/indojam.v3i1.1288</dc:identifier><dc:identifier>10.35472/indojam.v3i1.1288</dc:identifier><dc:source>Indonesian Journal of Applied Mathematics; Vol 3 No 1 (2023); 26</dc:source><dc:source>2774-2016</dc:source><dc:source>2774-2067</dc:source><dc:relation>https://journal.itera.ac.id/index.php/indojam/article/download/1288/424</dc:relation></oai_dc:dc>