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Studi in silico senyawa bioaktif tulang rawan hiu biru (Prionace glauca) dan ekstraknya sebagai agen antiinflamasi: Studi in silico senyawa bioaktif tulang rawan hiu biru (Prionace glauca) dan ekstraknya sebagai agen antiinflamasi

In silico study of bioactive compounds in blue shark (Prionace glauca) cartilage and its extract as anti-inflammatory agents: Studi in silico senyawa bioaktif tulang rawan hiu biru (Prionace glauca) dan ekstraknya sebagai agen antiinflamasi

Jurnal Pengolahan Hasil Perikanan Indonesia · Vol. 29 No. 5 (2026)

DOI
10.17844/rf3rmd10
ISSN
2354-886X, 2303-2111
Published
2026-06-17
Publisher
Department of Aquatic Product Technology IPB University in collaboration with Masyarakat Pengolahan Hasil Perikanan Indonesia (MPHPI)
Language
eng
License
creativecommons.org/licenses/by/4.0

Abstract

Indonesian

Tulang rawan hiu biru (Prionace glauca) diketahui mengandung berbagai senyawa bioaktif yang berpotensi bermanfaat bagi kesehatan manusia. Penelitian ini bertujuan mengidentifikasi senyawa bioaktif tulang rawan hiu serta mengevaluasi potensinya sebagai agen antiinflamasi melalui penargetan NF-kB p65 dan TNF-α convertase. Tepung tulang rawan hiu dan ekstraknya dianalisis menggunakan Liquid Chromatography-High Resolution Mass Spectrometry (LC-HRMS), sedangkan interaksi ligan-protein dievaluasi secara in silico dengan molecular docking menggunakan Autodock pada target NF-kB p65 (PDB ID: 2RAM) dan TNF-α convertase (PDB ID: 3EWJ). Analisis LC-HRMS menemukan 64 senyawa bioaktif pada tepung tulang rawan dan 141 senyawa pada ekstraknya. Sebanyak 20 senyawa (tepung) dan 37 senyawa (ekstrak) menunjukkan nilai mzCloud Best Match >80%. Tiga belas senyawa berhasil diidentifikasi, termasuk betaine, creatine, hypoxanthine, L‑norleucine, choline, caprolactam, nicotinamide, L‑phenylalanine, creatinine, guanine, trigonelline, trans‑3‑indoleacrylic acid, dan D-(+)-proline, dengan isocytosine dan lactamide spesifik pada tepung, serta 3,5-di-tert-butyl-4-hydroxybenzaldehyde, TEMPO, dan piperine spesifik pada ekstrak. Hasil docking menunjukkan bahwa L‑phenylalanine dan trans‑3‑indoleacrylic acid memiliki afinitas ikatan tinggi dan mampu berinteraksi stabil dengan situs aktif NF-kB p65 dan TNF-α convertase, sehingga berpotensi menghambat jalur proinflamasi yang dimediasi kedua protein tersebut. Temuan ini mengindikasikan bahwa tepung tulang rawan hiu dan ekstraknya menjanjikan sebagai kandidat agen terapeutik antiinflamasi dengan potensi toksisitas rendah yang perlu divalidasi lebih lanjut secara in vitro dan in vivo.

English

Blue shark (Prionace glauca) cartilage contains various bioactive compounds that may be beneficial to human health. This study aimed to identify bioactive compounds in shark cartilage and evaluate their potential as anti-inflammatory agents by targeting NF-kB p65 and TNF-α convertase. Shark cartilage powder and its extract were analyzed using Liquid Chromatography-High Resolution Mass Spectrometry (LC-HRMS), while ligand-protein interactions were evaluated in silico via molecular docking using Autodock on the NF-kB p65 (PDB ID: 2RAM) and TNF-α convertase (PDB ID: 3EWJ) targets. LC-HRMS analysis identified 64 bioactive compounds in the cartilage powder and 141 in the extract. A total of 20 powdered compounds (powder) and 37 compounds (extract) showed mzCloud Best Match values >80%. Thirteen compounds were successfully identified, including betaine, creatine, hypoxanthine, L-norleucine, choline, caprolactam, nicotinamide, L-phenylalanine, creatinine, guanine, trigonelline, trans-3-indoleacrylic acid, and D-(+)-proline, with isocytosine and lactamide specific to the powder, and 3,5-di-tert-butyl-4-hydroxybenzaldehyde, TEMPO, and piperine specific to the extract. Docking results indicated that l-phenylalanine and trans-3-indoleacrylic acid possess high binding affinities and stably interact with the active sites of NF-kB p65 and TNF-α convertase, potentially inhibiting the pro-inflammatory pathways mediated by these two proteins. These findings indicate that shark cartilage powder and its extract show promise as candidates for anti-inflammatory therapeutic agents with low toxicity potential, which requires further validation in vitro and in vivo studies.

Keywords

Collaboration network of the authors

40 authors · 135 co-authorship links · 2 across different organisations · showing the 40 most connected

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  • University of Brawijaya
  • Hasanuddin University
  • Affiliation unknown
  • Different organisations
  • Same organisation
  • Affiliation unknown
  • Thicker line = more joint articles · bigger circle = more articles
Show as table
Co-authorOrganisationJoint articles
Sri RahayuHasanuddin University5
Nashi WidodoUniversity of Brawijaya4
Aris SoewondoAffiliation unknown4
Sri WidyartiAffiliation unknown3
Fikriya Novita SariAffiliation unknown3
Yoga Dwi JatmikoAffiliation unknown3
Nursinah AmirHasanuddin University2
Eddy SuprayitnoAffiliation unknown2
Hardoko HardokoAffiliation unknown2
Moh DliyauddinAffiliation unknown2
Hideo TsuboiAffiliation unknown2
Muhammad Halim NatsirUniversity of Brawijaya2
Mansur IbrahimAffiliation unknown2
Aida SartimbulAffiliation unknown2
Apri ArisandiAffiliation unknown2
Farida RachmawatiAffiliation unknown2
Sefihara Paramitha SaktiAffiliation unknown2
Dwi purno WidekdoAffiliation unknown2
Wayan Firdaus MahmudyUniversity of Brawijaya1
Achmad RidokUniversity of Brawijaya1
Adnan FauziAffiliation unknown1
Retno Tri AstutiAffiliation unknown1
Rahmi NurdianiAffiliation unknown1
Putri YasminAffiliation unknown1
Omega Tantia NingsihAffiliation unknown1
Dwi Anggraini PuspitasariAffiliation unknown1
Meita Putri DelimaAffiliation unknown1
Tati NurhayatiAffiliation unknown1
Evira LisnainaAffiliation unknown1
Riki KurniawanAffiliation unknown1
Alfahreyzha Agung PrasetyaAffiliation unknown1
Adz Dzariyaat KhairAffiliation unknown1
Dimas AnugrahAffiliation unknown1
Nurlita Tadzlila WijayantiAffiliation unknown1

Affiliations come from OpenAlex; journal OAI-PMH metadata carries none. Authors without an OpenAlex ID are matched by name, which can merge or split people.

Metadata source: OAI-PMH (metadata jurnal) http://journal.ipb.ac.id/index.php/jphpi/oai, first harvested 9 Nov 2026, last seen 9 Nov 2026.
Original metadata (oai_dc)
<oai_dc:dc xmlns="http://www.openarchives.org/OAI/2.0/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:oai_dc="http://www.openarchives.org/OAI/2.0/oai_dc/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.openarchives.org/OAI/2.0/oai_dc/  http://www.openarchives.org/OAI/2.0/oai_dc.xsd">
	<dc:title xml:lang="id">Studi in silico senyawa bioaktif tulang rawan hiu biru (Prionace glauca) dan ekstraknya sebagai agen antiinflamasi: Studi in silico senyawa bioaktif tulang rawan hiu biru (Prionace glauca) dan ekstraknya sebagai agen antiinflamasi</dc:title>
	<dc:title xml:lang="en">In silico study of bioactive compounds in blue shark (Prionace glauca) cartilage and its extract as anti-inflammatory agents: Studi in silico senyawa bioaktif tulang rawan hiu biru (Prionace glauca) dan ekstraknya sebagai agen antiinflamasi</dc:title>
	<dc:creator xml:lang="en">Agustin, Titiek Indhira</dc:creator>
	<dc:creator xml:lang="id">Agustin, Titiek Indhira</dc:creator>
	<dc:creator xml:lang="id">Nursyam, Happy </dc:creator>
	<dc:creator xml:lang="id">Firdaus, Muhamad </dc:creator>
	<dc:creator xml:lang="id">Rifa’i, Muhaimin </dc:creator>
	<dc:creator xml:lang="id">Sare, Maria Dolorosa </dc:creator>
	<dc:creator xml:lang="id">Praditapuspa, Ersanda Nurma </dc:creator>
	<dc:subject xml:lang="id">inflamasi</dc:subject>
	<dc:subject xml:lang="id">komponen bioaktif</dc:subject>
	<dc:subject xml:lang="id">LC-HRMS</dc:subject>
	<dc:subject xml:lang="id">molecular docking</dc:subject>
	<dc:subject xml:lang="en">bioactive compounds</dc:subject>
	<dc:subject xml:lang="en">inflammation</dc:subject>
	<dc:subject xml:lang="en">LC-HRMS</dc:subject>
	<dc:subject xml:lang="en">molecular docking</dc:subject>
	<dc:description xml:lang="id">Tulang rawan hiu biru (Prionace glauca) diketahui mengandung berbagai senyawa bioaktif yang berpotensi bermanfaat bagi kesehatan manusia. Penelitian ini bertujuan mengidentifikasi senyawa bioaktif tulang rawan hiu serta mengevaluasi potensinya sebagai agen antiinflamasi melalui penargetan NF-kB p65 dan TNF-α convertase. Tepung tulang rawan hiu dan ekstraknya dianalisis menggunakan Liquid Chromatography-High Resolution Mass Spectrometry (LC-HRMS), sedangkan interaksi ligan-protein dievaluasi secara in silico dengan molecular docking menggunakan Autodock pada target NF-kB p65 (PDB ID: 2RAM) dan TNF-α convertase (PDB ID: 3EWJ). Analisis LC-HRMS menemukan 64 senyawa bioaktif pada tepung tulang rawan dan 141 senyawa pada ekstraknya. Sebanyak 20 senyawa (tepung) dan 37 senyawa (ekstrak) menunjukkan nilai mzCloud Best Match &amp;gt;80%. Tiga belas senyawa berhasil diidentifikasi, termasuk betaine, creatine, hypoxanthine, L‑norleucine, choline, caprolactam, nicotinamide, L‑phenylalanine, creatinine, guanine, trigonelline, trans‑3‑indoleacrylic acid, dan D-(+)-proline, dengan isocytosine dan lactamide spesifik pada tepung, serta 3,5-di-tert-butyl-4-hydroxybenzaldehyde, TEMPO, dan piperine spesifik pada ekstrak. Hasil docking menunjukkan bahwa L‑phenylalanine dan trans‑3‑indoleacrylic acid memiliki afinitas ikatan tinggi dan mampu berinteraksi stabil dengan situs aktif NF-kB p65 dan TNF-α convertase, sehingga berpotensi menghambat jalur proinflamasi yang dimediasi kedua protein tersebut. Temuan ini mengindikasikan bahwa tepung tulang rawan hiu dan ekstraknya menjanjikan sebagai kandidat agen terapeutik antiinflamasi dengan potensi toksisitas rendah yang perlu divalidasi lebih lanjut secara in vitro dan in vivo.</dc:description>
	<dc:description xml:lang="en">Blue shark (Prionace glauca) cartilage contains various bioactive compounds that may be beneficial to human health. This study aimed to identify bioactive compounds in shark cartilage and evaluate their potential as anti-inflammatory agents by targeting NF-kB p65 and TNF-α convertase. Shark cartilage powder and its extract were analyzed using Liquid Chromatography-High Resolution Mass Spectrometry (LC-HRMS), while ligand-protein interactions were evaluated in silico via molecular docking using Autodock on the NF-kB p65 (PDB ID: 2RAM) and TNF-α convertase (PDB ID: 3EWJ) targets. LC-HRMS analysis identified 64 bioactive compounds in the cartilage powder and 141 in the extract. A total of 20 powdered compounds (powder) and 37 compounds (extract) showed mzCloud Best Match values &amp;gt;80%. Thirteen compounds were successfully identified, including betaine, creatine, hypoxanthine, L-norleucine, choline, caprolactam, nicotinamide, L-phenylalanine, creatinine, guanine, trigonelline, trans-3-indoleacrylic acid, and D-(+)-proline, with isocytosine and lactamide specific to the powder, and 3,5-di-tert-butyl-4-hydroxybenzaldehyde, TEMPO, and piperine specific to the extract. Docking results indicated that l-phenylalanine and trans-3-indoleacrylic acid possess high binding affinities and stably interact with the active sites of NF-kB p65 and TNF-α convertase, potentially inhibiting the pro-inflammatory pathways mediated by these two proteins. These findings indicate that shark cartilage powder and its extract show promise as candidates for anti-inflammatory therapeutic agents with low toxicity potential, which requires further validation in vitro and in vivo studies.</dc:description>
	<dc:publisher xml:lang="en">Department of Aquatic Product Technology IPB University in collaboration with Masyarakat Pengolahan Hasil Perikanan Indonesia (MPHPI)</dc:publisher>
	<dc:date>2026-06-17</dc:date>
	<dc:type>info:eu-repo/semantics/article</dc:type>
	<dc:type>info:eu-repo/semantics/publishedVersion</dc:type>
	<dc:type xml:lang="en">Peer-reviewed Article</dc:type>
	<dc:format>application/pdf</dc:format>
	<dc:format>text/xml</dc:format>
	<dc:identifier>https://journal.ipb.ac.id/jphpi/article/view/68520</dc:identifier>
	<dc:identifier>10.17844/rf3rmd10</dc:identifier>
	<dc:source xml:lang="id">Jurnal Pengolahan Hasil Perikanan Indonesia; Vol 29 No 5 (2026): Jurnal Pengolahan Hasil Perikanan Indonesia 29(5)</dc:source>
	<dc:source xml:lang="en">Jurnal Pengolahan Hasil Perikanan Indonesia; Vol. 29 No. 5 (2026): Jurnal Pengolahan Hasil Perikanan Indonesia 29(5)</dc:source>
	<dc:source>2354-886X</dc:source>
	<dc:source>2303-2111</dc:source>
	<dc:language>eng</dc:language>
	<dc:relation>https://journal.ipb.ac.id/jphpi/article/view/68520/33490</dc:relation>
	<dc:relation>https://journal.ipb.ac.id/jphpi/article/view/68520/34127</dc:relation>
	<dc:rights xml:lang="en">Copyright (c) 2026 Titiek Indhira Agustin, Happy  Nursyam, Muhamad  Firdaus, Muhaimin  Rifa’i, Maria Dolorosa  Sare, Ersanda Nurma  Praditapuspa</dc:rights>
	<dc:rights xml:lang="en">https://creativecommons.org/licenses/by/4.0</dc:rights>
</oai_dc:dc>